Table 6.
Comparison of numbers of genes per CAZy family related to pectin main chain degradation. If an activity is only present in a single family then the values are in boldface. If the activity is present in multiple families, these are summed up in the ‘Total’ column and in boldface. PGA = endopolygalacturonase, PGX = exopolygalacturonases, RHG = endorhamnogalacturonase, RGX = exorhamnogalacturonase, XGH = xylogalacturonase, PEL = pectin lyase, PLY = pectate lyase, RGL = rhamnogalacturonan lyase, RHA = α-rhamnosidase, UGH = unsaturated galacturonan hydrolase, URH = unsaturated rhamnogalacturonan hydrolase.
| Species/strain | PGA |
PGX |
RHG |
RGX |
XGH |
PEL |
PLY |
RGL |
RHA |
UGH |
URH |
Total pectin main chain | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| GH28 | GH28 | GH28 | GH28 | GH28 | PL1 | PL1 | PL3 | PL9 | Total | PL4 | PL11 | PL26 | Total | GH78 | GH106 | Total | GH88 | GH105 | ||
| A. luchuensis | 7 | 3 | 5 | 3 | 1 | 6 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 2 | 7 | 0 | 7 | 1 | 2 | 38 |
| A. tubingensis | 7 | 3 | 5 | 3 | 1 | 6 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 2 | 7 | 1 | 8 | 1 | 2 | 39 |
| A. niger ATCC1015 | 6 | 4 | 5 | 3 | 1 | 6 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 2 | 7 | 1 | 8 | 1 | 2 | 39 |
| A. niger CBS 513.88 | 6 | 4 | 6 | 3 | 1 | 5 | 1 | 0 | 0 | 1 | 2 | 0 | 0 | 2 | 8 | 1 | 9 | 1 | 2 | 40 |
| A. brasiliensis | 6 | 4 | 5 | 3 | 1 | 6 | 1 | 0 | 0 | 1 | 3 | 0 | 0 | 3 | 8 | 1 | 9 | 1 | 2 | 42 |
| A. carbonarius | 8 | 3 | 4 | 3 | 1 | 4 | 1 | 0 | 0 | 1 | 2 | 0 | 1 | 3 | 5 | 1 | 6 | 0 | 2 | 35 |
| A. aculeatus | 9 | 2 | 5 | 2 | 1 | 5 | 1 | 0 | 0 | 1 | 3 | 0 | 1 | 4 | 6 | 0 | 6 | 1 | 2 | 38 |
| A. nidulans | 3 | 3 | 2 | 1 | 1 | 5 | 4 | 3 | 1 | 8 | 4 | 1 | 1 | 6 | 9 | 0 | 9 | 2 | 4 | 44 |
| A. sydowii | 2 | 3 | 3 | 2 | 1 | 6 | 4 | 2 | 1 | 7 | 4 | 1 | 1 | 6 | 9 | 0 | 9 | 4 | 4 | 47 |
| A. versicolor | 2 | 3 | 4 | 3 | 1 | 7 | 4 | 2 | 1 | 7 | 4 | 1 | 1 | 6 | 11 | 0 | 11 | 4 | 4 | 52 |
| A. flavus | 3 | 4 | 7 | 5 | 2 | 8 | 4 | 2 | 1 | 7 | 3 | 0 | 2 | 5 | 12 | 0 | 12 | 3 | 4 | 60 |
| A. oryzae | 3 | 3 | 7 | 5 | 2 | 8 | 4 | 2 | 1 | 7 | 5 | 0 | 2 | 7 | 9 | 0 | 9 | 2 | 4 | 57 |
| A. terreus | 1 | 3 | 1 | 2 | 0 | 4 | 3 | 2 | 1 | 6 | 3 | 0 | 1 | 4 | 4 | 0 | 4 | 0 | 2 | 27 |
| A. fumigatus | 3 | 3 | 3 | 2 | 1 | 4 | 2 | 3 | 1 | 6 | 3 | 0 | 1 | 4 | 5 | 0 | 5 | 2 | 3 | 36 |
| A. fischeri | 4 | 4 | 2 | 2 | 1 | 4 | 2 | 3 | 1 | 6 | 3 | 0 | 1 | 4 | 7 | 0 | 7 | 2 | 3 | 39 |
| A. clavatus | 1 | 2 | 0 | 0 | 0 | 2 | 0 | 1 | 0 | 1 | 2 | 0 | 0 | 2 | 5 | 0 | 5 | 0 | 3 | 16 |
| A. wentii | 2 | 3 | 3 | 3 | 1 | 4 | 1 | 2 | 0 | 3 | 3 | 0 | 1 | 4 | 5 | 0 | 5 | 0 | 2 | 30 |