Table 7.
Comparison of numbers of genes per CAZy family related to pectin side chain degradation. If an activity is only present in a single family then the values are in boldface. If the activity is present in multiple families, these are summed up in the ‘Total’ column and in boldface. PME = pectin methyl esterase, RGAE = rhamnogalacturonan acetyl esterase, ABN = endoarabinanase, ABX = exoarabinanase, ABF = α-arabinofuranosidase, LAC = β-galactosidase, GAL = endogalactanase.
| Species/strain | PME |
RGAE |
ABN |
ABX |
ABF |
LAC |
GAL |
Total pectin side chain | Total pectin main chain | Total pectin | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CE8 | CE12 | GH43 | GH93 | GH43 | GH51 | GH54 | Total | GH2 | GH35 | Total | GH53 | ||||
| A. luchuensis | 3 | 4 | 5 | 1 | 2 | 4 | 1 | 7 | 1 | 5 | 6 | 1 | 27 | 38 | 65 |
| A. tubingensis | 3 | 3 | 5 | 1 | 2 | 4 | 1 | 7 | 1 | 5 | 6 | 1 | 26 | 39 | 65 |
| A. niger ATCC1015 | 3 | 3 | 4 | 1 | 2 | 4 | 1 | 7 | 1 | 5 | 6 | 1 | 25 | 39 | 64 |
| A. niger CBS 513.88 | 3 | 3 | 4 | 0 | 2 | 3 | 1 | 6 | 1 | 5 | 6 | 2 | 24 | 40 | 64 |
| A. brasiliensis | 3 | 3 | 5 | 1 | 2 | 4 | 1 | 7 | 1 | 5 | 6 | 1 | 26 | 42 | 68 |
| A. carbonarius | 3 | 3 | 6 | 1 | 2 | 3 | 1 | 6 | 1 | 4 | 5 | 1 | 25 | 35 | 60 |
| A. aculeatus | 4 | 4 | 4 | 2 | 5 | 5 | 1 | 11 | 1 | 4 | 5 | 1 | 31 | 38 | 69 |
| A. nidulans | 3 | 3 | 4 | 2 | 3 | 2 | 1 | 6 | 3 | 3 | 6 | 1 | 23 | 44 | 67 |
| A. sydowii | 2 | 4 | 4 | 3 | 5 | 2 | 1 | 8 | 4 | 4 | 8 | 1 | 30 | 47 | 77 |
| A. versicolor | 3 | 4 | 4 | 4 | 5 | 2 | 1 | 8 | 4 | 3 | 7 | 3 | 33 | 52 | 85 |
| A. flavus | 5 | 5 | 4 | 3 | 5 | 4 | 1 | 10 | 2 | 7 | 9 | 2 | 38 | 60 | 98 |
| A. oryzae | 5 | 5 | 4 | 3 | 5 | 3 | 1 | 9 | 2 | 7 | 9 | 1 | 36 | 57 | 93 |
| A. terreus | 1 | 3 | 4 | 4 | 4 | 4 | 1 | 9 | 4 | 4 | 8 | 1 | 30 | 27 | 57 |
| A. fumigatus | 4 | 4 | 5 | 3 | 4 | 2 | 1 | 7 | 3 | 5 | 8 | 1 | 32 | 36 | 68 |
| A. fischeri | 4 | 4 | 5 | 3 | 4 | 2 | 1 | 7 | 3 | 5 | 8 | 1 | 32 | 39 | 71 |
| A. clavatus | 2 | 2 | 5 | 1 | 1 | 3 | 1 | 5 | 0 | 2 | 2 | 1 | 18 | 16 | 34 |
| A. wentii | 2 | 3 | 6 | 4 | 5 | 3 | 0 | 8 | 1 | 4 | 5 | 1 | 29 | 30 | 59 |