Antibodies |
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Bacterial and Virus Strains |
AAV1.Syn.GCaMP6f.WPRE.SV40 |
Penn Vector Core |
CAT#100837-AAV1 |
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Biological Samples |
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Chemicals, Peptides, and Recombinant Proteins |
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Critical Commercial Assays |
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Deposited Data |
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Experimental Models: Cell Lines |
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Experimental Models: Organisms/Strains |
Mouse: C57BL/6J |
Jackson |
RRID: IMSR_JAX:000664 |
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Oligonucleotides |
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Recombinant DNA |
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Software and Algorithms |
MATLAB R2015b |
Mathworks |
https://www.mathworks.com/products/matlab.html; RRID: SCR_001622 |
MonkeyLogic |
Asaad & Eskandar, 2008 |
http://www.brown.edu/Research/monkeylogic/ |
Scanbox |
Neurolabware |
https://scanbox.org/ |
PCA/ICA neuron identification |
Mukamel, E. A., Nimmerjahn, A. & Schnitzer, M. J. 2009 |
https://github.com/mukamel-lab/CellSort |
Demon’s algorithm |
Thirion, Vercauteren et al., 2009 |
https://www.mathworks.com/help/images/ref/imregdemons.html |
Glmnet |
Friedman et al., 2010 |
https://web.stanford.edu/~hastie/glmnet_matlab/ |
Calcium imaging deconvolution algorithm |
Pnevmatikakis et al., 2016 |
https://github.com/epnev/constrained-foopsi |
ImageJ 1.49t |
NIH |
https://imagej.nih.gov/ij/; RRID: SCR_003070
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Other |
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