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. Author manuscript; available in PMC: 2019 Nov 21.
Published in final edited form as: Neuron. 2018 Oct 11;100(4):900–915.e9. doi: 10.1016/j.neuron.2018.09.024
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Bacterial and Virus Strains
AAV1.Syn.GCaMP6f.WPRE.SV40 Penn Vector Core CAT#100837-AAV1
Biological Samples
Chemicals, Peptides, and Recombinant Proteins
Critical Commercial Assays
Deposited Data
Experimental Models: Cell Lines
Experimental Models: Organisms/Strains
Mouse: C57BL/6J Jackson RRID: IMSR_JAX:000664
Oligonucleotides
Recombinant DNA
Software and Algorithms
MATLAB R2015b Mathworks https://www.mathworks.com/products/matlab.html; RRID: SCR_001622
MonkeyLogic Asaad & Eskandar, 2008 http://www.brown.edu/Research/monkeylogic/
Scanbox Neurolabware https://scanbox.org/
PCA/ICA neuron identification Mukamel, E. A., Nimmerjahn, A. & Schnitzer, M. J. 2009 https://github.com/mukamel-lab/CellSort
Demon’s algorithm Thirion, Vercauteren et al., 2009 https://www.mathworks.com/help/images/ref/imregdemons.html
Glmnet Friedman et al., 2010 https://web.stanford.edu/~hastie/glmnet_matlab/
Calcium imaging deconvolution algorithm Pnevmatikakis et al., 2016 https://github.com/epnev/constrained-foopsi
ImageJ 1.49t NIH https://imagej.nih.gov/ij/; RRID: SCR_003070
Other