Table S2.
Characteristics of resistance genes
| Isolates | dfrE (n=26) | lsaA (n=26) | emeA (n=26) | fexA (n=23) | ANT(9) -Ia (n=12) | tetO (n=20) | dfrG (n=19) | ErmB (n=19) | tetK (n=18) | APH(3′)-IIIa (n=17) | AAC(6′)-Ie-APH(2″)-Ia (n=17) | cat (n=17) | satNA4 (n=16) | ErmA (n=18) | lnuB (n=12) | lsaE (n=12) | aad(6) (n=9) | tetS (n=2) | tetM (n=2) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6,888 | 99.3% | 98.8% | 97.7% | 98.9% | 100.0% | NA | 100.0% | NA | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | 85.2% | 100.0% | 99.8% | 100.0% | 99.6% | 95.7% |
| 8,714 | 100.0% | 99.2% | 97.7% | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| 10,938 | 99.3% | 98.8% | 97.7% | 98.9% | 100.0% | 95.6% | 100.0% | 100.0% | NA | 100.0% | 100.0% | NA | 98.9% | 85.2% | 100.0% | 100.0% | 100.0% | NA | NA |
| 11,340 | 100.0% | 98.8% | 97.7% | 98.9% | NA | 95.3% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 100.0% | 99.4% | 85.2% | NA | NA | 100.0% | NA | NA |
| 11,382 | 100.0% | 99.4% | 97.7% | 98.9% | NA | 95.5% | NA | 100.0% | 99.8% | NA | NA | 97.2% | NA | 85.2% | NA | NA | NA | NA | NA |
| 12,645 | 99.3% | 98.2% | 97.7% | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| 13,470 | 99.3% | 99.6% | 97.7% | 98.9% | NA | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | NA | 99.4% | 85.2% | NA | NA | 100.0% | NA | NA |
| 13,484 | 100.0% | 98.2% | 97.7% | 98.9% | NA | 90.9% | 100.0% | 100.0% | 95.2% | NA | 99.7% | 97.2% | NA | 85.2% | NA | NA | NA | NA | NA |
| 14,980 | 100.0% | 99.4% | 97.7% | 98.9% | 100.0% | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | 85.2% | 100.0% | 100.0% | NA | NA | NA |
| 15,224 | 99.3% | 98.8% | 97.7% | 98.9% | NA | 95.6% | 100.0% | 100.0% | NA | NA | NA | 100.0% | NA | 85.2% | NA | NA | NA | NA | NA |
| 15,407 | 99.3% | 98.8% | 97.5% | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| 15,814 | 99.3% | 98.8% | 97.7% | 98.9% | 100.0% | NA | 100.0% | 99.2% | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | 85.2% | 100.0% | 100.0% | 100.0% | 99.6% | 95.7% |
| 17,838 | 99.3% | 99.6% | 97.7% | 98.9% | 100.0% | 95.5% | 99.4% | 100.0% | 99.8% | 100.0% | 100.0% | 100.0% | 99.4% | 85.2% | 100.0% | 100.0% | 100.0% | NA | NA |
| 18,026 | 100.0% | 98.8% | 97.7% | 98.9% | NA | 95.5% | NA | 99.6% | 99.8% | 100.0% | 98.0% | 97.2% | 99.4% | 85.2% | NA | NA | NA | NA | NA |
| 19,663 | 99.3% | 99.6% | 97.7% | 98.9% | 100.0% | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 100.0% | 99.4% | 85.2% | 100.0% | 99.8% | 100.0% | NA | NA |
| 19,910 | 100.0% | 99.0% | 97.7% | 98.9% | NA | 95.5% | 100.0% | NA | 99.8% | 100.0% | NA | NA | NA | 85.2% | NA | NA | NA | NA | NA |
| 23,903 | 100.0% | 99.4% | 97.7% | 98.9% | 100.0% | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | NA | 100.0% | 100.0% | NA | NA | NA |
| 23,967 | 100.0% | 99.4% | 97.7% | 98.9% | 100.0% | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | NA | 100.0% | 100.0% | NA | NA | NA |
| 24,393 | 99.3% | 99.6% | 97.7% | 98.9% | NA | 95.5% | NA | NA | 99.8% | NA | NA | NA | NA | NA | NA | NA | NA | NA | NA |
| 26,167 | 99.3% | 99.6% | 97.7% | 98.9% | NA | 95.5% | NA | 100.0% | 99.8% | 100.0% | 100.0% | NA | 99.4% | 85.2% | NA | NA | 100.0% | NA | NA |
| 27,149 | 100.0% | 98.8% | 97.7% | 98.9% | 100.0% | NA | 100.0% | NA | NA | 100.0% | 100.0% | 100.0% | 99.4% | 85.2% | 100.0% | 100.0% | NA | NA | NA |
| 27,451 | 100.0% | 99.4% | 97.7% | 98.9% | 100.0% | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | NA | 100.0% | 100.0% | NA | NA | NA |
| 31,890 | 100.0% | 99.4% | 97.7% | 98.9% | 100.0% | 95.5% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | 97.2% | 99.4% | NA | 100.0% | 100.0% | NA | NA | NA |
| 32,142 | 99.3% | 98.8% | 97.5% | 98.9% | NA | 95.6% | 100.0% | 100.0% | NA | NA | NA | 100.0% | NA | 85.2% | NA | NA | NA | NA | NA |
| 32,633 | 100.0% | 98.8% | 97.7% | 98.9% | 100.0% | 95.3% | 100.0% | 100.0% | 99.8% | 100.0% | 100.0% | NA | 99.4% | 85.2% | 100.0% | 100.0% | 100.0% | NA | NA |
| 33,710 | 99.3% | 98.8% | 97.5% | 98.9% | NA | 95.6% | 100.0% | 100.0% | NA | NA | NA | 100.0% | NA | 85.2% | NA | NA | NA | NA | NA |
Abbreviation: NA, not available.