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An example phylogenomic tree used to identify unknown Mycobacterium samples to the species- and/or subspecies-level. Tree was constructed as previously described (Riojas et al.2018). Each leaf on the tree corresponds to the test sample (in red) or to the reference genomes of the species and/or subspecies type strains, or in the case of the M. tuberculosis complex, the variants (Riojas et al.2018). The outer ring is comprised of the accession numbers for the WGS of each strain.
