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. Author manuscript; available in PMC: 2019 Oct 15.
Published in final edited form as: Arch Biochem Biophys. 2018 Aug 27;656:31–37. doi: 10.1016/j.abb.2018.08.012

Table 1.

Structural statistics for human SHIP2-SH2 domaina

Conformationally restricting constraints b
Distance constraints
    Total 1187
    Intra-residue (i=j) 277
    Sequential (|i-j|=1) 293
    Medium-range (1<|i–j|<5) 146
    Long-range (|i–j|≥5) 471
    Hydrogen bond constraints
    Long-range (|i–j|≥5)/total
20/46
    Dihedral angle constraints 108
Residue constraint violations b
Average number of distance violations per structure
    0.1–0.2Å 6.6
    0.2–0.5 Å 2.05
    >0.5Å 0
Average RMS distance violation/constraint (Å) 0.02
    Maximum distance violation (Å) 0.38
Average number of dihedral angle violations per structure
    1–10° 10.65
    >10° 0
Average RMS dihedral angle violation/constraint (degree) 1.07
Maximum dihedral angle violation (degree) 8.8
RMSD from average coordinates b,c
    Backbone /Heavy atoms (Å) 0.7/1.3
Ramachandran plot statistics b,c
    Most favored/Allowed regions (%) 96.7/3
    Disallowed regions (%) 0.2
Global quality scores(raw/Z-score) b
    Verify3D 0.37/ −1.44
    Prosall 0.45/−0.83
    Procheck(phi-psi) c −0.37/−1.14
    Procheck(all) c −0.30/−1.77
    Molprobity clash 13.48/−0.79
RPF Scores d
    Recall/Precision 0.98/0.90
    F-measure/ DP-score 0.94/0.77
a

Structural statistics were computed for the ensemble of 20 deposited structures.

b

Calculated using the PSVS 1.4 program. Residues (20–117) were analyzed.

c

Ordered residues ranges (with the sum of φ and ψ order parameters > 1.8): 28–38, 42–49, 55–70, 78–82, 87–104, 113–115.

d

RPF scores reflected the goodness-of-fit of the final ensemble of structures including disordered residues to the NMR data.