Table 2.

Top variant of genome-wide significant signals in the GOMAP GWAS analyses

Variant	GWAS	EA	NEA	EAF	OR (95% CI)	Info	P value
chr6:163319442	SCZplusT2D vs Controls	G	A	0.91	3.81 (3.32–4.29)	0.56	5.46E-09
rs1449245	SCZplusT2D vs Controls	A	G	0.79	1.96 (1.71–2.2)	0.85	2.58E-08
rs7903146	T2D vs Controls	T	C	0.38	1.66 (1.5–1.81)	1.00	3.31E-11
rs7903146	T2D vs SCZ	C	T	0.61	1.53 (1.39–1.67)	1.00	1.09E-09
rs17616243	SCZ vs Controls	T	C	0.16	2.03 (1.79–2.27)	0.72	3.26E-09
rs6598475	T2D vs Controls	T	G	0.36	1.56 (1.4–1.72)	0.93	1.95E-08

EA effect allele, NEA non-effect allele, EAF effect allele frequency, OR odd ratio, CI confidence interval