Table 4.
Pairwise genetic distances (FST) & Fisher exact test (p-value) calculated between highland and reference goat populations.
| Chromosome position | SNPs | M allele | Anno. | H_M | P-value | H_L | P-value | M_L | P-value |
|---|---|---|---|---|---|---|---|---|---|
| (FST) | (FST) | (FST) | |||||||
| Chr24:25791412 | T | 0.06 | 0.00 | 0.08 | 1.13E-04 | 0.00 | 0.88 | ||
| Chr24:25794517 | G | 0.05 | 0.00 | 0.12 | 1.30E-07 | 0.02 | 0.03 | ||
| Chr24:25794535 | A | 0.05 | 0.00 | 0.01 | 0.12 | 0.03 | 0.13 | ||
| Chr24:25794564 | A | 0.03 | 0.06 | 0.00 | 1.00 | 0.03 | 0.06 | ||
| Chr24:25794694 | SNP1∗ | T | R597E | 0.25 | 3.03E-12 | 0.45 | 1.22E-20 | 0.04 | 0.02 |
| Chr24:25794695 | SNP2∗ | C | T595I | 0.25 | 3.03E-12 | 0.42 | 2.17E-19 | 0.03 | 0.04 |
| Chr24:25794700 | A | 0.03 | 0.06 | 0.00 | 0.25 | 0.03 | 0.68 | ||
| Chr24:25794771 | SNP3∗ | C | G572S | 0.20 | 3.24E-10 | 0.45 | 5.25E-20 | 0.06 | 0.00 |
| Chr24:25794881 | A | 0.10 | 1.40E-05 | 0.18 | 3.53E-09 | 0.01 | 0.13 | ||
| Chr24:25794882 | A | 0.00 | 1.00 | 0.00 | 1.00 | 0.00 | 1.00 | ||
| Chr24:25794934 | A | 0.00 | 1.00 | 0.12 | 1.30E-06 | 0.11 | 1.30E-06 | ||
| Chr24:25796278 | C | 0.10 | 0.00 | 0.19 | 2.75E-09 | 0.02 | 0.04 | ||
| Chr24:25796283 | C | 0.04 | 0.02 | 0.06 | 0.00 | 0.00 | 0.41 | ||
| Chr24:25799144 | G | 0.03 | 0.06 | 0.00 | 1.00 | 0.03 | 0.21 | ||
| Chr24:25799255 | SNP4∗ | G | 0.25 | 1.73E-13 | 0.47 | 2.08E-22 | 0.05 | 0.01 | |
| Chr24:25799281 | G | 0.01 | 1.00 | 0.03 | 0.01 | 0.06 | 0.01 | ||
| Chr24:25801885 | C | 0.01 | 0.06 | 0.11 | 5.71E-08 | 0.07 | 0.00 | ||
| Chr24:25802080 | T | 0.01 | 1.00 | 0.03 | 0.03 | 0.06 | 0.03 | ||
| Chr24:25802106 | G | 0.00 | 1.00 | 0.01 | 0.50 | 0.01 | 0.50 | ||
| Chr24:25803941 | C | 0.08 | 0.01 | 0.27 | 1.01E-10 | 0.09 | 0.00 | ||
| Chr24:25803953 | G | 0.01 | 0.50 | 0.00 | 1.00 | 0.00 | 1.00 | ||
| Chr24:25807002 | T | 0.00 | 2.19E-13 | 0.00 | 7.22E-17 | 0.00 | 0.35 | ||
| Chr24:25807209 | T | 0.06 | 0.01 | 0.14 | 6.14E-07 | 0.02 | 0.02 | ||
| Chr24:25807240 | T | 0.00 | 1.00 | 0.09 | 7.26E-06 | 0.09 | 7.27E-06 | ||
| Chr24:25817330 | SNP5∗ | A | 0.31 | 8.94E-16 | 0.58 | 4.25E-26 | 0.07 | 0.01 | |
| Chr24:25817361 | G | 0.00 | 1.00 | 0.00 | 1.00 | 0.00 | 0.50 | ||
| Chr24:25817366 | G | 0.03 | 0.06 | 0.02 | 0.10 | 0.00 | 0.80 | ||
Top five SNPs are shown with asterisk.