Table 5.
Pairwise linkage disequilibrium of the non-synonymous and synonymous SNPs of DSG3 in the highland and lowland goat populations.
| SNPS | Highland goat | Lowland goat | Highland goat | Lowland goat | Highland goat | Lowland goat | |
|---|---|---|---|---|---|---|---|
| SNP1 | SNP2 | D’ | r2 | LOD | |||
| SNP1 (C > T) | SNP2 (G > C) | 1.00 | 1.00 | 1.00 | 0.94 | 9.82 | 31.71 |
| SNP1 (C > T) | SNP3 (T > C) | 1.00 | 1.00 | 1.00 | 0.91 | 9.82 | 30.46 |
| SNP1 (C > T) | SNP4 (G > A) | 1.00 | 0.93 | 1.00 | 0.79 | 9.82 | 22.95 |
| SNP1 (C > T) | SNP5 (G > A) | 1.00 | 0.96 | 0.63 | 0.73 | 5.19 | 21.95 |
| SNP2 (G > C) | SNP3 (T > C) | 1.00 | 0.94 | 1.00 | 0.86 | 9.82 | 27.56 |
| SNP2 (G > C) | SNP4 (G > A) | 1.00 | 0.93 | 1.00 | 0.74 | 9.82 | 21.87 |
| SNP2 (G > C) | SNP5 (G > A) | 1.00 | 1.00 | 0.63 | 0.75 | 5.19 | 24.01 |
| SNP3 (T > C) | SNP4 (G > A) | 1.00 | 0.93 | 1.00 | 0.71 | 9.82 | 21.12 |
| SNP3 (T > C) | SNP5 (G > A) | 1.00 | 0.96 | 0.63 | 0.67 | 5.19 | 20.58 |
| SNP4 (G > A) | SNP5 (G > A) | 1.00 | 0.96 | 0.63 | 0.84 | 5.19 | 25.26 |