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. 2018 Nov 9;9(88):35856–35869. doi: 10.18632/oncotarget.26321

Figure 3. Pairwise linkage disequilibrium (LD) plots of UW and HAMB patients from the KSHV K12 and microRNA cluster region.

Figure 3

Localization of microRNAs genes is indicated on the top and the side, with nucleotide positions based on BCBL-1 genomic coordinates. A strong LD (D’) is indicated by a darker shade of blue (D’ close to 1) whereas white represents no LD (D’ = 0). The LD was calculated as Tajima's D’ with VCFtools 0.1.15. A total of 79 of the original 102 sites were kept after filtering.