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. 2018 Nov 26;8:17350. doi: 10.1038/s41598-018-35338-y

Table 3.

DNA sequence of primer pairs used in PCR assays in human, rat and mice tissue.

Gene name Primer sequence forward (5′−3′)* Primer sequence reverse (5′−3′)* Annealing temperature (°C) Efficiency(%)
Rattus norvegicus pre-mir-146A GCTCTGAGAACTGAATTCCATGGGT ATGACGATAGAGCTATCCCAGC 61 72.1
Mus musculus pre-mir146A GCTCTGAGAACTGAATTCCATGGGT AGCTGAAGAACTGAATTTCACAGGTC 61 81.7
Homo sapiens, Rattus norvegicus and Mus musculus RNU6-1 GCTCGCTTCGGCAGCACATATACTAA ACGAATTTGCGTGTGTACTCCTTGCG 69 91.1
Homo sapiens mature MIR146a UGAGAACUGAAUUCCAUGGGUU Universal primer (Quiagen Cat. N° 1046471) 55 90.6
Mus misculus mature Mir146a UGAGAACUGAAUUCCAUGGGUU Universal primer (Quiagen Cat. N° 1046471) 55 113
Rattus norvegicus mature Mir146a UGAGAACUGAAUUCCAUGGGUU Universal primer (Quiagen Cat. N° 1046471 55 90.3
Control snRNA RNU6B Quiagen Cat. N° MS00033740 Quiagen kit Cat. N° MS00033740 55 103.5
Mus musculus Ifng GCTCTGAGACAATGAACGCTACAC TTCTTCCACATCATGCCACTTGAG 59.2 100.7
Mus musculus Ccl2 CAAGATGATCCCAATGAGTAG TTGGTGACAAAAACTACAGC 60 96.5
Mus musculus S100a8 GCCCTCTACAAGAATGACTTCAAG ATCACCATCGCAAGGAACTCC 60 91.4
Mus musculus Alpi CATGGACATTGATGTGATCC AGACTGGTTACTGTCACTTG 60 96.7
Mus musculus 18 s ACACGGACAGGATTGACAGATTG GCCAGAGTCTCGTTCGTTATCG 60 88
Mus musculus Hprt AGGGATTTGAATCACGTTTG TTTACTGGCAACATCAACAG 60 97.3
Mus musculus Ppib TGGAGATGAATCTGTAGGAC CAAATCCTTTCTCTCCTGTAG 60 100.4
Mus musculus Vil1 TATGGAGGATCGAGGCTATG AGGTAGTCATCCATCTGTGT 60 98.9
Mus musculus Lgr5 AGAACACTGACTTTGAATGG CACTTGGAGATTAGGTAACTG 58 116.2
Mus musculus Cd3e ATCTTGGTAGAGAGAGCATTC CCCATTTTAAGTTCTCGTCAC 60 109.4
Rattus norvegicus Tlr2 AAAAACTGCTGAGATTTTGC TACTAACATCCAACACCTCC 60 84.6
Rattus norvegicus Tlr5 AAAAGCAGCAGTATTTGAGG ACTAGGAAACCGTCCTTATG 60 86.3
Rattus norvegicus Tlr9 CCTTTGGTTTCCAGTAACATC CAGAAGTCCATATTCACAGTTC 60 106
Rattus norvegicus Nod2 AACCTCAGCCATAACATCC ACTTCCAGCAGTAAGTCTAC 60 94
Rattus norvegicus Tlr44 ACCTAGATCTGAGCTTCAAC TTGTCTCAATTTCACACCTG 60 113.8
Rattus norvegicus 18 s GGACACGGACAGGATTGAC TCGCTCCACCAACTAAGAAC 60 96.3