Table 3.
DNA sequence of primer pairs used in PCR assays in human, rat and mice tissue.
| Gene name | Primer sequence forward (5′−3′)* | Primer sequence reverse (5′−3′)* | Annealing temperature (°C) | Efficiency(%) |
|---|---|---|---|---|
| Rattus norvegicus pre-mir-146A | GCTCTGAGAACTGAATTCCATGGGT | ATGACGATAGAGCTATCCCAGC | 61 | 72.1 |
| Mus musculus pre-mir146A | GCTCTGAGAACTGAATTCCATGGGT | AGCTGAAGAACTGAATTTCACAGGTC | 61 | 81.7 |
| Homo sapiens, Rattus norvegicus and Mus musculus RNU6-1 | GCTCGCTTCGGCAGCACATATACTAA | ACGAATTTGCGTGTGTACTCCTTGCG | 69 | 91.1 |
| Homo sapiens mature MIR146a | UGAGAACUGAAUUCCAUGGGUU | Universal primer (Quiagen Cat. N° 1046471) | 55 | 90.6 |
| Mus misculus mature Mir146a | UGAGAACUGAAUUCCAUGGGUU | Universal primer (Quiagen Cat. N° 1046471) | 55 | 113 |
| Rattus norvegicus mature Mir146a | UGAGAACUGAAUUCCAUGGGUU | Universal primer (Quiagen Cat. N° 1046471 | 55 | 90.3 |
| Control snRNA RNU6B | Quiagen Cat. N° MS00033740 | Quiagen kit Cat. N° MS00033740 | 55 | 103.5 |
| Mus musculus Ifng | GCTCTGAGACAATGAACGCTACAC | TTCTTCCACATCATGCCACTTGAG | 59.2 | 100.7 |
| Mus musculus Ccl2 | CAAGATGATCCCAATGAGTAG | TTGGTGACAAAAACTACAGC | 60 | 96.5 |
| Mus musculus S100a8 | GCCCTCTACAAGAATGACTTCAAG | ATCACCATCGCAAGGAACTCC | 60 | 91.4 |
| Mus musculus Alpi | CATGGACATTGATGTGATCC | AGACTGGTTACTGTCACTTG | 60 | 96.7 |
| Mus musculus 18 s | ACACGGACAGGATTGACAGATTG | GCCAGAGTCTCGTTCGTTATCG | 60 | 88 |
| Mus musculus Hprt | AGGGATTTGAATCACGTTTG | TTTACTGGCAACATCAACAG | 60 | 97.3 |
| Mus musculus Ppib | TGGAGATGAATCTGTAGGAC | CAAATCCTTTCTCTCCTGTAG | 60 | 100.4 |
| Mus musculus Vil1 | TATGGAGGATCGAGGCTATG | AGGTAGTCATCCATCTGTGT | 60 | 98.9 |
| Mus musculus Lgr5 | AGAACACTGACTTTGAATGG | CACTTGGAGATTAGGTAACTG | 58 | 116.2 |
| Mus musculus Cd3e | ATCTTGGTAGAGAGAGCATTC | CCCATTTTAAGTTCTCGTCAC | 60 | 109.4 |
| Rattus norvegicus Tlr2 | AAAAACTGCTGAGATTTTGC | TACTAACATCCAACACCTCC | 60 | 84.6 |
| Rattus norvegicus Tlr5 | AAAAGCAGCAGTATTTGAGG | ACTAGGAAACCGTCCTTATG | 60 | 86.3 |
| Rattus norvegicus Tlr9 | CCTTTGGTTTCCAGTAACATC | CAGAAGTCCATATTCACAGTTC | 60 | 106 |
| Rattus norvegicus Nod2 | AACCTCAGCCATAACATCC | ACTTCCAGCAGTAAGTCTAC | 60 | 94 |
| Rattus norvegicus Tlr44 | ACCTAGATCTGAGCTTCAAC | TTGTCTCAATTTCACACCTG | 60 | 113.8 |
| Rattus norvegicus 18 s | GGACACGGACAGGATTGAC | TCGCTCCACCAACTAAGAAC | 60 | 96.3 |