Table 1. Summary of isolates sequenced in study of terrestrial bird migration and West Nile virus circulation, United States.
Isolate | Phylogeny code | GenBank accession no. | State | Year |
---|---|---|---|---|
Laco_3008 | CO03C | MH170226 | CO | 2003 |
AIDL-M-015 | CO03D | MH170228 | CO | 2003 |
LACO-3041 | CO03E | MH170231 | CO | 2003 |
Laco_3038 | CO03F | MH170234 | CO | 2003 |
AIDL-M-012 | CO03G | MH170237 | CO | 2003 |
Laco_3020 | CO03H | MH170238 | CO | 2003 |
Laco_3022 | CO03I | MH170254 | CO | 2003 |
laco_3030 | CO03J | MH170256 | CO | 2003 |
CO1862 | CO04E | MH170227 | CO | 2004 |
CO_2572 | CO04F | MH170246 | CO | 2004 |
DB_4218 | CO04G | MH170248 | CO | 2004 |
DB_4217 | CO04H | MH170233 | CO | 2004 |
CO_06–7390 | CO06A | MH170229 | CO | 2006 |
CO_06–608 | CO06B | MH170232 | CO | 2006 |
CO_06–10725 | CO06C | MH170235 | CO | 2006 |
CO_07–11032 | CO06D | MH170236 | CO | 2006 |
CO_06–10723 | CO06E | MH170239 | CO | 2006 |
CO_06–584 | CO06F | MH170243 | CO | 2006 |
CO_06–10716 | CO06G | MH170249 | CO | 2006 |
CO_07–8779 | CO07C | MH170230 | CO | 2007 |
CO_07–10970 | CO07D | MH170241 | CO | 2007 |
GT_02566 | CO07E | MH170242 | CO | 2007 |
CO_07–8778 | CO07F | MH170244 | CO | 2007 |
CO_07–11027 | CO07G | MH170251 | CO | 2007 |
CO_07–9340 | CO07H | MH170252 | CO | 2007 |
CO_08–13382 | CO08A | MH170240 | CO | 2008 |
CO_08–13386 | CO08B | MH170245 | CO | 2008 |
CO-13363 | CO08C | MH170247 | CO | 2008 |
CO_08–13401 | CO08D | MH170250 | CO | 2008 |
CO_08–13787 | CO08E | MH170253 | CO | 2008 |
CO_08–13410 | CO08F | MH170255 | CO | 2008 |
DES_566–01 | GA01C | MH170263 | GA | 2001 |
DES_107–01 | GA01D | MH170273 | GA | 2001 |
DES_1476–01 | GA01E | MH170276 | GA | 2001 |
DES_1191–02 | GA02C | MH170274 | GA | 2002 |
DES_160–02 | GA02D | MH170275 | GA | 2002 |
DES_1201–02 | GA02E | MH170264 | GA | 2002 |
GA_04–230 | GA04A | MH170270 | GA | 2004 |
GA_Chc_04–1485 | GA04B | MH170265 | GA | 2004 |
GA_05–179 | GA05A | MH170269 | GA | 2005 |
GA_lwn_50_4936 | GA05B | MH170257 | GA | 2005 |
M07–069 | GA07A | MH170272 | GA | 2007 |
M07–087 | GA07B | MH170258 | GA | 2007 |
M07–086 | GA07C | MH170266 | GA | 2007 |
DES_07–53 | GA07D | MH170267 | GA | 2007 |
DES_07–62 | GA07E | MH170268 | GA | 2007 |
DKB_08–0403 | GA08A | MH170261 | GA | 2008 |
DBK_08–0491 | GA08B | MH170271 | GA | 2008 |
FNT_09–199 | GA09A | MH170259 | GA | 2009 |
Lwn_09–846 | GA09B | MH170262 | GA | 2009 |
FNT_09–144 | GA09C | MH170260 | GA | 2009 |
VA_AV_321–00 | VA00A | MH166882 | VA | 2000 |
VA_AV_593 | VA00B | MH166904 | VA | 2000 |
VA_AV_380 | VA00C | MH166903 | VA | 2000 |
VA_AV_573–00 | VA00D | MH166901 | VA | 2000 |
VA_TC_2535–01 | VA01A | MH166886 | VA | 2001 |
VA_B_037–02 | VA02A | MH166883 | VA | 2002 |
VA_BD_37 | VA02B | MH166905 | VA | 2002 |
VA_TC_1500 | VA02C | MH166887 | VA | 2002 |
VA_TC_1500–02 | VA02D | MH166899 | VA | 2002 |
VA_TC_2076 | VA02E | MH166911 | VA | 2002 |
VA_TC_2147 | VA02F | MH166915 | VA | 2002 |
VA_TC_2790–03 | VA03C | MH166906 | VA | 2003 |
VA_TC_4043 | VA03D | MH166900 | VA | 2003 |
VA_TC_3278 | VA03E | MH166912 | VA | 2003 |
VA_1909–04 | VA04A | MH166884 | VA | 2004 |
VA_TC_1597 | VA04B | MH166919 | VA | 2004 |
VA_TC_1155 | VA04C | MH166913 | VA | 2004 |
VA_TC_1272 | VA04D | MH166917 | VA | 2004 |
VA_P_3321–05 | VA05A | MH166888 | VA | 2005 |
VA_P_4209 | VA05B | MH166895 | VA | 2005 |
VA_SN_3082–05 | VA05C | MH166908 | VA | 2005 |
VA_P_4485–06 | VA06A | MH166889 | VA | 2006 |
VA_P_4770–06 | VA06B | MH166907 | VA | 2006 |
VA_SP_5645–06 | VA06C | MH166890 | VA | 2006 |
VA_TC_4177 | VA06D | MH166910 | VA | 2006 |
VA_1660 | VA07A | MH166891 | VA | 2007 |
VA_2327 | VA07B | MH166894 | VA | 2007 |
VA_TC_1368–08 | VA08A | MH166898 | VA | 2008 |
VA_SP_1202–08 | VA08B | MH166892 | VA | 2008 |
VA_TC_2045–08 | VA08C | MH166921 | VA | 2008 |
VA_TC_1732–08 | VA08D | MH166918 | VA | 2008 |
VA_3920 | VA09A | MH166885 | VA | 2009 |
VA_SN_3222–09 | VA09B | MH166909 | VA | 2009 |
VA_SN_5859–09 | VA09C | MH166896 | VA | 2009 |
VA_TC_1732–09 | VA09D | MH166920 | VA | 2009 |
VA_SN_4826–09 | VA09E | MH166914 | VA | 2009 |
VA_2191 | VA10A | MH166902 | VA | 2010 |
VA_TC_1117–10 | VA10B | MH166897 | VA | 2010 |
VA_TC_2020–10 | VA10C | MH166893 | VA | 2010 |
VA_TC_1184–10 | VA10D | MH166916 | VA | 2010 |