Table 6. Incidence-controlled down-sampling strategy used in study of of terrestrial bird migration and WNV circulation, United States*.
Location, year |
WNV incidence |
Sequences available |
Sequences used |
GA | |||
2001 | 7.16 × 10−7 | 5 | 3 |
2002 | 3.29 × 10−6 | 11 | 6 |
2003 | 3.13 × 10−6 | 1 | 1 |
2004 | 1.60 × 10−6 | 2 | 2 |
2005 | 1.01 × 10−6 | 1 | 1 |
2006 | 2.18 × 10−7 | 0 | 0 |
2007 | 2.46 × 10−6 | 5 | 5 |
2008 | 4.21 × 10−7 | 3 | 3 |
2009 |
4.16 × 10−7 |
3 |
3 |
NY | |||
2001 | 6.81 × 10−7 | 10 | 3 |
2002 | 3.55 × 10−6 | 10 | 6 |
2003 | 2.97 × 10−6 | 15 | 5 |
2004 | 3.65 × 10−7 | 10 | 3 |
2005 | 1.57 × 10−6 | 7 | 4 |
2006 | 8.37 × 10−7 | 5 | 3 |
2007 | 8.36 × 10−7 | 9 | 3 |
2008 | 1.67 × 10−6 | 18 | 4 |
2009 |
3.11 × 10−7 |
2 |
2 |
VA | |||
2001 | 0 | 6 | 2 |
2002 | 2.20 × 10−6 | 10 | 5 |
2003 | 2.58× 10−6 | 6 | 5 |
2004 | 6.69 × 10−7 | 4 | 3 |
2005 | 0 | 3 | 2 |
2006 | 0 | 4 | 2 |
2007 | 3.87 × 10−7 | 2 | 2 |
2008 | 0 | 4 | 2 |
2009 | 6.31 × 10−7 | 5 | 3 |
*The numbers of West Nile virus sequences available and of sequences used in the down-sampled dataset are summarized. WNV, West Nile virus.