. 2018 Nov 8;7(18):e01357-18. doi: 10.1128/MRA.01357-18

TABLE 1.

Source, place, and date of isolation, as well as genome information, for each Clavibacter species strain used in this study

Nomenclature	CIRM-CFBP^a code	Host of isolation	Yr of isolation	Country of isolation	Genome information							Accession no.			Reference or source
					G+C content (%)	Genome length (bp)	No. of contigs	Sequencing coverage (×)	No. of protein- coding genes	No. of RNA genes	No. of pseudogenes	DDBJ/ENA/ GenBank	Sequence Read Archive
					G+C content (%)	Genome length (bp)	No. of contigs	Sequencing coverage (×)	No. of protein- coding genes	No. of RNA genes	No. of pseudogenes	DDBJ/ENA/ GenBank	Run	Expt
Clavibacter michiganensis subsp. insidiosus	CFBP 1195	Medicago sativa	1964	United Kingdom	72.84	3,203,470	805	450	3,333	52	199	QWDZ01000000	SRR7977544	SRX4810326	16
Clavibacter michiganensis subsp. insidiosus	CFBP 6488	Medicago sativa	1998	Czech Republic	72.23	3,225,729	1,892	435	3,890	52	329	QWEA01000000	SRR7977605	SRX4810381	2
Clavibacter michiganensis	CFBP 7491	Solanum lycopersicum	ND^b	ND	73.02	3,288,331	921	475	3,560	51	122	QWEB01000000	SRR7977581	SRX4810357	This study
Clavibacter michiganensis	CFBP 7493	Solanum lycopersicum	ND	ND	72.91	3,275,884	782	570	3,487	51	91	QWEC01000000	SRR7977687	SRX4810463	This study
Clavibacter michiganensis subsp. nebraskensis	CFBP 7577	Zea mays	ND	ND	72.75	2,982,864	1,273	510	3,291	53	373	QWED01000000	SRR7977688	SRX4810464	2
Clavibacter michiganensis subsp. californiensis	CFBP 8216^T	Solanum lycopersicum	2000	United States (Hawaii)	72.71	3,193,415	811	515	3,367	51	105	QWEE01000000	SRR7983517	SRX4814786	3
Clavibacter michiganensis subsp. chilensis	CFBP 8217^T	Solanum lycopersicum	2007	Netherlands	73.50	3,044,807	1,002	450	3,356	54	114	QWGS01000000	SRR7983516	SRX4814785	3
Clavibacter spp.	CFBP 8615	Solanum lycopersicum	2015	Iran	73.23	3,129,097	620	580	3,236	50	78	QWGT01000000	SRR7983538	SRX4814807	6
	CFBP 8616	Solanum lycopersicum	2015	Iran	73.15	3,094,686	961	555	3,342	50	151	QWGU01000000	SRR7983541	SRX4814809	6
Clavibacter michiganensis subsp. phaseoli	CFBP 8627^T	Phaseolus vulgaris	2009	Spain	73.46	3,052,098	1,009	460	3,289	53	205	QWGV01000000	SRR7983540	SRX4814808	4

CIRM-CFBP, International Center for Microbial Resources—French Collection of Plant-Associated Bacteria, IRHS UMR 1345 INRA-ACO-UA, Beaucouzé, France (https://www6.inra.fr/cirm_eng/CFBP-Plant-Associated-Bacteria).

ND, not determined.