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. 2018 Nov 26;62(12):e00720-18. doi: 10.1128/AAC.00720-18

FIG 3.

FIG 3

Comparison of phenotypic antimicrobial susceptibility patterns and resistomes inferred from WGS data through the bioMérieux EpiSeq analysis pipeline. (a) Antimicrobial susceptibilities of the 13 isolates included in the study. Isolate names and susceptibility results (R, resistance; S, susceptibility) are displayed in black for sequenced isolates and gray for nonsequenced isolates. (b) Resistome associated with each antimicrobial drug shown in panel a (except for LZD, which is detailed in Table 1) for the 7 sequenced isolates. At the top are the antibiotic resistance genes. +, present; −, absent. The enzyme encoded by the aaD gene is ANT(4′)-Ia. Antibiotic resistance associated with single point mutations in the drug target is indicated by the observed amino acid change conferring resistance. PEN, penicillin; MET, methicillin; TOB, tobramycin; KAN, kanamycin; GEN, gentamicin; ERY, erythromycin; CLI, clindamycin; SXT, trimethoprim-sulfamethoxazole; CIP, ciprofloxacin; TET, tetracycline; FA, fusidic acid; RIF, rifampin; VAN, vancomycin; LZD, linezolid.