Skip to main content
. 2018 Nov 20;9:1683. doi: 10.3389/fpls.2018.01683

Table 2.

Candidate genes around the reliable QTNs and QTN clusters.

QTN (QTN cluster)a Trait Marker Physic position (bp)b candidate genec Physic position (bp) Annotationd
qtncPH-3H-1 PH 3HL_37004393–3_511749149 3H: 631870705–633068955 HORVU3Hr1G090980, HORVU3Hr1G090970 3H: 634,077,598–634,081,600, 3H: 634,071,757–634,080,040 sdw1/denso, GA20-oxidases; SAM-dependent_Mtases, like PvSAMS
qtncIL3-3H-3 IL3 3HL_37004393–3_511668322 3H: 631870705–636535362 HORVU3Hr1G090980, HORVU3Hr1G090970 3H: 634,077,598–634,081,600, 3H: 634,071,757–634,080,040 sdw1/denso, GA20-oxidases; SAM-dependent_Mtases, like PvSAMS
qtncIL4-3H-4 IL4 3HL_37004393–3_511668322 3H: 631870705–636535362 HORVU3Hr1G090980, HORVU3Hr1G090970 3H: 634,077,598–634,081,600, 3H: 634,071,757–634,080,040 sdw1/denso, GA20-oxidases; SAM-dependent_Mtases, like PvSAMS
qtnPH-7H-2 PH 7HS_33062962 7H: 108670637 HORVU7Hr1G040290 7H:108834015–108839990 AMS1p, Alpha-mannosidase
qtnIL2-7H-6 IL2 M_114215_455 7H: 258071311 HORVU7Hr1G058360 7H: 258,860,422–258,866,854 DHHC-cysteine-rich domain S-acyltransferase
qtnPH-3H-2 PH 2HS_32409186 3H: 651696476 HORVU3Hr1G096010 3H: 651,659,644–651,663,119 Homeobox-like, SANT/Myb
qtnSMS-2H-9 SMS Vrs1 2H: 652030802 HORVU2Hr1G092290 2H: 652,031,058–652,032,990 Vrs1, Homeobox
qtncSLP-2H-11 SLP Vrs1–2HL_17075593 2H: 652030802–653982961 HORVU2Hr1G092290 2H: 652,031,058–652,032,990 Vrs1, Homeobox
qtncGP-2H-15 GP Vrs1–2_527241334 2H: 652030802–652604015 HORVU2Hr1G092290 2H: 652,031,058–652,032,990 Vrs1, Homeobox
qtnGS-2H-17 GS Vrs1 2H: 652030802 HORVU2Hr1G092290 2H: 652,031,058–652,032,990 Vrs1, Homeobox
qtnTGW-2H-20 TGW Vrs1 2H: 652030802 HORVU2Hr1G092290 2H: 652,031,058–652,032,990 Vrs1, Homeobox
qtnMSL-2H-7 MSL 2_600749073 2H: 727985438 HORVU2Hr1G113880 2H:730027508–730030208 AP2-like ethylene-responsive transcription factor
qtncSP-2H-13 SP 2_531255437–M_124056_833 2H: 662335248–663628734 HORVU2Hr1G094080 2H: 662,298,334–662,300,891 BTB/POZ
qtnGS-2H-18 GS 2_625783669 2H: 764361924 HORVU2Hr1G126690 2H: 764,279,329–764,290,102 Acyl-CoA N-acetyltransferase
qtnGWS-2H-19 GWS 2_625783669 2H: 764361924 HORVU2Hr1G126690 2H: 764,279,329–764,290,102 Acyl-CoA N-acetyltransferase
qtn(GP-GWP- GWS)-4H-2 GP, GWP, GWS 4_497278091 4H: 596447744 HORVU4Hr1G075070 4H: 596,446,043–596,448,382 Patatin
a

Reliable QTNs and QTN clusters which were detected at least in 2 years environments and multiple GWAS methods;

b

Physic position of chromosome based on the blast result for the sequence of marker in barley genome database (http://webblast.ipk-gatersleben.de/barley_ibsc/);

c

Candidate gene was acquired from http://plants.ensembl.org/Hordeum_vulgare/Info/Index;