Table 1.

Summary of grouped datasets to facilitate comparisons between proteins and measures.

Group	Alignment	Averaging	All Protein Comparisons within the Group
1R-self-1	self	local	A-A, B-B, C-C, X-X, Y-Y, Z-Z
1R-self-2 1	self	global	A-A, B-B, C-C, X-X, Y-Y, Z-Z
1R-wt-wt-1	self	local	A-B, A-C, B-C
1R-wt-wt-2	mean	local	A-B, A-C, B-C
1R-mt-wt-1	self	local	X-A, X-B, X-C, Y-A, Y-B, Y-C, Z-A, Z-B, Z-C
1R-mt-wt-2	mean	local	X-A, X-B, X-C, Y-A, Y-B, Y-C, Z-A, Z-B, Z-C
2R-wt-wt-1	N/A	local	A-B, A-C, B-C
2R-mt-wt-1	N/A	local	X-A, X-B, X-C, Y-A, Y-B, Y-C, Z-A, Z-B, Z-C
2R-wt-wt-2	N/A	shifting	A-B, A-C, B-C
2R-mt-wt-2	N/A	shifting	X-A, X-B, X-C, Y-A, Y-B, Y-C, Z-A, Z-B, Z-C

¹Data from this group is not shown in any graph because results are nearly the same as 1R-self-1.