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. 2018 Nov 26;18:300. doi: 10.1186/s12870-018-1534-8

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 7 — TF prediction and APA analysis. a Number and family of top 29 TFs predicted by SMRT. b Distribution of the number of poly(A) sites per gene. c Nucleotide composition around poly(A) cleavage sites. The relative frequency of a nucleotide is shown as a function of genomic position across all poly(A) cleavage sites detected in our data. d MEME analysis of an over-represented motif at 25-nts upstream of the poly(A) site in red clover transcripts