Table 4.
Summary of sample mapping results and unigene FPKM range in the samples
| VCR-H2 | VSR-H2 | FCR-H2 | FSR-H2 | |
|---|---|---|---|---|
| Mapping type | # of reads | # of reads | # of reads | # of reads |
| Total reads | 168,919,008 | 132,495,282 | 173,152,596 | 144,290,892 |
| Total mapped reads (%) | 119,515,634 (70.75%) | 109,307,056 (82.5%) | 138,427,148 (79.95%) | 116,911,796 (81.03%) |
| Perfect match (%) | 65,678,862 (38.88%) | 60,722,868 (45.83%) | 78,248,375 (45.19%) | 68,117,391 (47.21%) |
| Mismatch (%) | 53,836,772 (31.87%) | 48,584,188 (36.67%) | 60,178,773 (34.75%) | 48,794,405 (33.82%) |
| Unique match (%) | 69,672,500 (41.25%) | 63,678,416 (48.06%) | 79,407,602 (45.86%) | 69,740,706 (48.33%) |
| Multi-position match (%) | 49,843,134 (29.51%) | 45,628,640 (34.44%) | 59,019,546 (34.09%) | 47,171,090 (32.69%) |
| Total unmapped reads (%) | 49,403,374 (29.25%) | 23,188,226 (17.5%) | 34,725,448 (20.05) | 27,379,096 (18.97%) |
| FPKM > = 10 | 11,022 | 11,025 | 10,354 | 84,44 |
| FPKM 1–10 | 39,737 | 34,068 | 24,760 | 27,604 |
| FPKM < = 1 | 65,024 | 23,983 | 44,046 | 33,347 |