Table 4.
Common QTNs for seed protein content in soybean across different multi-methods.
| Methoda | Marker | Chr | Position (bp) | QTN effect | LOD score | r2 (%)b |
|---|---|---|---|---|---|---|
| 2,3 | AX-157088197 | 1 | 2,142,538 | 0.24,0.51 | 3.06,3.15 | 5.41,5.50 |
| 2,5 | AX-157514742 | 1 | 5,244,469 | 0.41,0.44 | 4.76,4.76 | 8.58,9.99 |
| 2,4 | AX-157393800 | 1 | 36,630,129 | 0.53,0.61 | 4.17,5.49 | 6.39,8.57 |
| 2,3,4 | AX-157197609 | 2 | 19,981,350 | −0.34,−0.65,−0.38 | 3.38,3.36,3.81 | 8.06,6.14,9.58 |
| 3,5 | AX-157074676 | 2 | 43,036,996 | −0.64,−0.30 | 3.65,3.10 | 5.59,4.83 |
| 2,4 | AX-157487767 | 3 | 28,963,194 | 0.45,0.47 | 4.72,3.90 | 4.74,5.30 |
| 2,3,4,5 | AX-157594705 | 4 | 47,793,555 | −0.35,−0.65,−0.42,−0.35 | 3.94,3.24,5.26,4.40 | 6.97,5.61,9.85,6.96 |
| 1,2,4,5 | AX-157397239 | 4 | 47,801,472 | −0.32,−0.27,−0.23,−0.25 | 3.13,3.07,3.43,3.73 | 9.42,6.54,4.75,5.88 |
| 1,2,4,5 | AX-157489326 | 6 | 48,361,864 | 0.43,0.34,0.42,0.31 | 3.78,4.26,6.53,3.37 | 11.81,7.50,11.14,6.19 |
| 1,4 | AX-157083233 | 6 | 49,396,770 | −0.78,−0.51 | 3.20,3.65 | 19.21,6.67 |
| 1,3,4,5 | AX-157462104 | 7 | 20,724,011 | 0.82,1.35,0.65,0.50 | 4.64,4.97,5.90,3.21 | 15.18,9.83,9.58,5.78 |
| 1,2,5 | AX-157506141 | 9 | 34,120,396 | −0.56,−0.44,−0.41 | 4.02,4.03,3.63 | 12.36,7.81,6.79 |
| 3,5 | AX-157570733 | 10 | 43,785,659 | 0.75,0.34 | 5.09,3.88 | 9.27,7.63 |
| 4,5 | AX-157566978 | 12 | 1,258,280 | −0.24,−0.36 | 3.65,4.52 | 3.84,8.50 |
| 3,5 | AX-157069070 | 12 | 10,655,900 | 0.83,0.42 | 4.24,5.50 | 8.30,8.67 |
| 4,5 | AX-157357710 | 12 | 11,111,913 | −0.61,−0.62 | 6.90,5.32 | 9.83,12.74 |
| 2,4,5 | AX-157217990 | 14 | 7,160,557 | −0.23,−0.24,−0.23 | 3.42,3.22,3.63 | 4.79,5.45,4.92 |
| 1,4 | AX-157512649 | 16 | 24,057,874 | 0.31,0.24 | 3.16,3.44 | 7.00,4.09 |
| 1,5 | AX-157168337 | 16 | 28,693,806 | 0.64,0.37 | 4.66,3.94 | 14.20,5.23 |
| 1,3,5 | AX-157333937 | 18 | 2,064,407 | 0.56,0.96,0.48 | 3.56,4.33,4.23 | 11.90,8.54,8.58 |
| 1,2,4 | AX-157443296 | 18 | 6,597,875 | −0.49,−0.36,−0.38 | 3.83,4.26,5.12 | 15.96,8.71,9.88 |
| 1,2,3,5 | AX-157298785 | 18 | 6,620,851 | −0.39(−0.40),−0.29, −0.67,−0.34 (−0.39) | 4.21 (4.02),4.32, 4.43,4.56,(5.33) | 10.78(11.02),5.86, 7.78,8.40 (10.48) |
amrMLM, FASTmrMLM, FASTmrEMMA, pLARmEB, and ISIS EM-BLASSO were indicated by 1–5, respectively. br2 (%), proportion of total phenotypic variation explained by each QTN. Bold text indicates the QTNs appeared to be near QTLs associated with protein content in soybean that had been mapped in earlier studies.