Bacterial and Virus Strains |
|
|
Escherichia coli, OP50 |
Caenorhabditis Genetics Center |
WormBase ID: OP50 |
Escherichia coli, DH5α |
ThermoFisher Scientific |
Cat#8265017 |
Escherichia coli, DH5β |
NEB |
Cat#C30191
|
Chemicals, Peptides, and Recombinant Proteins |
|
|
Aldicarb |
Sigma |
Cat#33386 |
Sytox green |
Sigma |
Cat#S7020 |
Latrunculin A |
Sigma |
Cat#L5163 |
Critical Commercial Assays |
|
|
cDNA synthesis kit |
Roche |
Cat#04897030001 |
SYBR Premix Ex TaqII master mix |
Clontech |
Cat#RR820B |
RNeasy Plus Mini Kit |
QIAGEN |
Cat#74136 |
Experimental Models: Organisms/Strains |
|
|
N2 C.elegans wild isolate |
Caenorhabditis Genetics Center |
WormBase ID: N2 |
Mutant hic-1(ok3475) X
|
Caenorhabditis Genetics Center |
Strain RB2512 |
Mutant nab-1(ok943) I
|
Caenorhabditis Genetics Center |
Strain RB1017 |
Mutant acr-16(ok789) V
|
Caenorhabditis Genetics Center |
Strain RB918 |
Mutant mig-14(mu71) II
|
Caenorhabditis Genetics Center |
Strain CF367 |
Mutant lin-17(n671) I
|
Caenorhabditis Genetics Center |
Strain MT1306 |
Integrated line Punc-17::RFP |
Josh Kaplan Lab (Babu et al., 2011) |
nuIs321 |
Integrated line Punc-25::GFP |
Caenorhabditis Genetics Center |
juIs76 CGC strain number CZ1200 |
Integrated line Punc-129::GFP::SNB-1 |
Josh Kaplan Lab (Sieburth et al., 2005) |
nuIs152 |
Integrated line Punc-25::SNB-1::GFP |
Josh Kaplan Lab (Hao et al., 2012) |
nuIs376 |
Integrated line Pacr-2::mCherry::RAB-3 |
Mike Francis Lab (Petrash et al., 2013) |
uIfs63 strain pPRB47 |
Integrated line Punc-129::SYD-2::YFP |
Josh Kaplan Lab (Sieburth et al., 2005) |
nuIs159 |
Integrated line Punc-25::SYD-2::GFP |
Caenorhabditis Genetics Center (Yeh et al., 2005) |
hpIs3 CGC strain number ZM54 |
Integrated line Pmyo-3::UNC-29::GFP |
Villu Maricq lab (Francis et al., 2005) |
akIs38 |
Integrated line Pmyo-3::ACR-16::GFP |
Josh Kaplan Lab (Babu et al., 2011) |
nuIs299 |
Integrated line Pmyo-3::UNC-49::GFP |
Josh Kaplan Lab (Babu et al., 2011) |
nuIs283 |
Integrated line Pmyo-3::GCaMP3.35 |
Caenorhabditis Genetics Center (Schwarz et al., 2012) |
goels3 CGC strain number HBR4 |
Integrated line Pnab-1::NAB-1::GFP |
Mei Zhen Lab (Hung et al., 2007) |
hpIs66 |
Integrated line Punc-17:: GFP-UtrCH |
This study |
indIs001 |
Integrated line Punc-129::LIN-44::mCherry |
This study, array number IndEx32 from (Pandey et al., 2017) |
indIs002 |
Integrated line Punc-17::CWN-2::mCherry |
This study |
indIs003 |
Integrated line Punc-17::NLP-21::YFP |
Derek Sieburth Lab (Staab et al., 2013) |
vjIs30 |
Integrated line Punc-129::GSLN-1::YFP |
Josh Kaplan Lab (Sieburth et al., 2005) |
nuIs169 |
Plasmid BAB#0101 Phic-1::mCherry (injected into WT) |
This study |
Array IndEx001/strain BAB047 |
Plasmid BAB#0102 Phic-1::HIC-1::mCherry (injected into WT) |
This study |
Array IndEx002/strain BAB348 |
Plasmid BAB#0103 Prab-3::HIC-1 (injected into hic-1) |
This study |
Array IndEx003/strain BAB349 |
Plasmid BAB#0104 Plet-413::HIC-1 (injected into hic-1) |
This study |
Array IndEx004/strain BAB350 |
Plasmid BAB#0105 Pmyo-3::HIC-1 (injected into hic-1) |
This study |
Array IndEx005/strain BAB351 |
Plasmid BAB#0106 Punc-17::HIC-1 (injected into hic-1) |
This study |
Array IndEx006/strain BAB352 |
Plasmid BAB#0107 Punc-25::HIC-1 (injected into hic-1) |
This study |
Array IndEx007/strain BAB353 |
Plasmid BAB#0108 Punc-17::HIC-1 ΔC(4aa) (injected into hic-1) |
This study |
Array IndEx008/strain BAB354 |
Plasmid BAB#0110 Punc-17::NAB-1::VN173 (injected into uIfs63) |
This study |
Array IndEx009/ strain BAB355 |
Plasmid BAB#0111 Punc-17::HIC-1::VC155 (injected into uIfs63) |
This study |
Array IndEx010/ strain BAB356 |
Plasmid BAB#0112 Punc-17::HIC-1ΔC(4aa)::VC155 (injected into uIfs63) |
This study |
Array IndEx011/ strain BAB357 |
Plasmid BAB#0115 Phic-1::HIC-1ΔC(4aa)::mCherry (injected into nuIs152) |
This study |
Array IndEx012/ strain BAB358 |
Plasmid BAB#0114 Punc-25:: GFP-UtrCH (injected into WT) |
This study |
Array IndEx013/ strain BAB359 |
Plasmid BAB#0110 Punc-17::NAB-1::VN173 (injected into nab-1) |
This study |
Array IndEx014/ strain BAB360 |
Plasmid BAB#0109 Punc-17::CWN-2::mCherry (injected into WT) |
This study |
Array IndEx015/ strain BAB361 |
Plasmid BAB#0110, BAB#0111 Punc-17::HIC-1:: VC155;Punc17::NAB-1::VN173 (injected into uIfs63) |
This study |
Array IndEx016/ strain BAB362 |
Plasmid BAB#0110, BAB#0112 Punc-17::HIC-1ΔC(4aa):: VC155; Punc17::NAB-1::VN173 (injected into uIfs63) |
This study |
Array IndEx017/ strain BAB363 |
Plasmid BAB#0116 Punc-17:: HIC-1(ΔC(4aa)+NAB-1 (ABD)) (injected into BAB323) |
This study |
Array IndEx018/ strain BAB364 |
Plasmid BAB#0116 Punc-17:: HIC-1(ΔC(4aa)+NAB-1 (ABD)) (injected into BAB330) |
This study |
Array IndEx019/ strain BAB365 |
Plasmid BAB#0116 Punc-17:: HIC-1(ΔC(4aa)+NAB-1 (ABD)) (injected into BAB333) |
This study |
Array IndEx020/ strain BAB366 |
Plasmid BAB#0108 Punc-17::HIC-1 ΔC(4aa) (injected into BAB323) |
This study |
Array IndEx021/ strain BAB367 |
Plasmid BAB#0108 Punc-17::HIC-1ΔC(4aa) (injected into BAB330) |
This study |
Array IndEx022/ strain BAB368 |
Plasmid BAB#0108 Punc-17::HIC-1 ΔC(4aa) (injected into BAB333) |
This study |
Array IndEx023/ strain BAB369 |
Plasmid pCFJ68 Punc-122::GFP (injected into indIs003) |
This study |
Array IndEx024/ strain BAB370 |
Plasmid pCFJ68 Punc-122::GFP (injected into indIs002) |
This study |
Array IndEx025/ strain BAB371 |
hic-1(ok3475); nuIs321 |
This study |
BAB302 |
hic-1(ok3475); juIs76 |
This study |
BAB303 |
hic-1(ok3475); nuIs152 |
This study |
BAB304 |
hic-1(ok3475); juIs376 |
This study |
BAB305 |
hic-1(ok3475); uIfs63 |
This study |
BAB306 |
hic-1(ok3475); nuIs159 |
This study |
BAB307 |
hic-1(ok3475); hpIs3 |
This paper |
BAB308 |
hic-1(ok3475); nuIs169 |
This paper |
BAB309 |
hic-1(ok3475); nuIs169; IndEx006 |
This study |
BAB310 |
hic-1(ok3475); akIs38 |
This study |
BAB311 |
hic-1(ok3475); nuIs299 |
This study |
BAB312 |
hic-1(ok3475); nuIs299; IndEx006 |
This study |
BAB313 |
hic-1(ok3475); nuIs283 |
This study |
BAB314 |
hic-1(ok3475); goels3 |
This study |
BAB315 |
hic-1(ok3475); goels3; IndEx006 |
This study |
BAB316 |
hic-1(ok3475); indIs001 |
This study |
BAB317 |
hic-1(ok3475); indIs001; IndEx006 |
This study |
BAB318 |
hic-1(ok3475); indIs002 |
This study |
BAB319 |
hic-1(ok3475); indIs002; IndEx006 |
This study |
BAB320 |
hic-1(ok3475); IndIs003 |
This study |
BAB321 |
hic-1(ok3475); IndIs003; IndEx006 |
This study |
BAB322 |
nab-1(ok943); hic-1(ok3475) |
This study |
BAB323 |
mig-14(mu71); hic-1(ok3475) |
This study |
BAB324 |
lin-17(sy277); hic-1(ok3475) |
This study |
BAB325 |
nab-1(ok943); IndEx014 |
This study |
BAB326 |
nab-1(ok943); hpIs66 |
This study |
BAB327 |
nab-1(ok943); IndIs001 |
This study |
BAB328 |
nab-1(ok943); IndEx014; IndIs001 |
This study |
BAB329 |
nab-1(ok943); hic-1(ok3475); IndIs001 |
This study |
BAB330 |
nab-1(ok943); IndIs003 |
This study |
BAB331 |
nab-1(ok943); IndEx014; IndIs003 |
This study |
BAB332 |
nab-1(ok943); hic-1(ok3475); IndIs003 |
This study |
BAB333 |
mig-14(mu71); IndIs003 |
This study |
BAB334 |
mig-14(mu71); hic-1(ok3475); IndIs003 |
This study |
BAB335 |
hic-1(ok3475); hpIs66 |
This study |
BAB336 |
hpIs66; IndEx002 |
This study |
BAB337 |
hic-1(ok3475); vjIs30 |
This study |
BAB348 |
nab-1(ok943); nuIs299 |
This study |
BAB349 |
nab-1(ok943); nuIs299; IndEx014 |
This study |
BAB350 |
nab-1(ok943); hic-1(ok3475); nuIs299 |
This study |
BAB351 |
hic-1(ok3475); acr-16(ok789) |
This study |
BAB352 |
hic-1(ok3475); hpIs66; IndEx006 |
This study |
BAB355 |
hic-1(ok3475); IndEx024 |
This study |
BAB356 |
hic-1(ok3475); IndEx006; IndEx024 |
This study |
BAB357 |
mig-14(mu71); IndEx024 |
This study |
BAB358 |
mig-14(mu71); hic-1(ok3475); IndEx024 |
This study |
BAB359 |
hic-1(ok3475); IndEx025 |
This study |
BAB360 |
hic-1(ok3475); IndEx006; IndEx025 |
This study |
BAB361 |
Oligonucleotides |
|
|
See Table S1 for primer sequences and information |
|
N/A |
Recombinant DNA |
|
|
pPD49.26 |
Addgene |
Plasmid#1686 (Andrew Fire lab) |
pCFJ910 |
Addgene |
Plasmid#44481 (Erik Jorgensen lab) |
pCFJ68 (Exp5605_Punc-122::GFP::unc-54utr) |
Addgene |
Plasmid#19325 (Erik Jorgensen lab) |
pCFJ90 (Pmyo-2::mCherry::unc-54utr) |
Addgene |
Plasmid#19327 (Erik Jorgensen lab) |
pCFJ104 (Pmyo-3::mCherrry:::unc-54) |
Addgene |
Plasmid#19328 (Erik Jorgensen lab) |
GFP-UtrCH (reporter for F-actin) |
Addgene |
Plasmid#26737 (William Bement lab) |
Phic-1::mCherry |
This study |
pBAB# 0101 |
Phic-1::HIC-1::mCherry |
This study |
pBAB# 0102 |
Prab-3::HIC-1 |
This study |
pBAB# 0103 |
Plet-413::HIC-1 |
This study |
pBAB# 0104 |
Pmyo-3::HIC-1 |
This study |
pBAB# 0105 |
Punc-17::HIC-1 |
This study |
pBAB# 0106 |
Punc-25::HIC-1 |
This study |
pBAB# 0107 |
Punc-17::HIC-1ΔC(4aa) |
This study |
pBAB# 0108 |
Punc-17::CWN-2::mCherry |
This study |
pBAB# 0109 |
Punc-17::NAB-1::Linker::VN173 |
This study |
pBAB# 0110 |
Punc-17::HIC-1::Linker::VC155 |
This study |
pBAB# 0111 |
Punc-17:: HIC-1ΔC(4aa)::Linker::VC155 |
This study |
pBAB# 0112 |
Punc-17:: GFP-UtrCH |
This study |
pBAB# 0113 |
Punc-25:: GFP-UtrCH |
This study |
pBAB# 0114 |
Phic-1 ::HIC-1ΔC(4aa)::mCherry |
This study |
pBAB# 0115 |
Punc-17:: HIC-1(ΔC(4aa)+NAB-1(ABD)) |
This study |
pBAB# 0116 |
Software and Algorithms |
|
|
ImageJ |
n/a |
https://imagej.nih.gov/ij/ |
Prism7 |
Graphpad Prism |
https://www.graphpad.com/ |
ApE |
n/a |
http://jorgensen.biology.utah.edu/wayned/ape/ |
Snapgene |
Snapgene |
http://www.snapgene.com/ |
Mind the graph |
Mind the GRAPH |
https://mindthegraph.com |