Table 3.
Host-databases of various plant genetic and genomic resources.
| DB name | Resources | Plants | URL |
|---|---|---|---|
| Genbank | Genomic | Various plant species | https://www.ncbi.nlm.nih.gov/genbank/ |
| EMBL | Genomic | Various plant species | https://www.ebi.ac.uk/ |
| DDBJ | Genomic | Various plant species | http://www.ddbj.nig.ac.jp/ |
| UniProt | Protein and functional | Various plant species | http://www.uniprot.org/ |
| NCBI | Genomic | Various plant species | https://www.ncbi.nlm.nih.gov/ |
| GOLD | Genomic, metagenomics, transcriptomic | Various plant species | https://gold.jgi.doe.gov/cgi-bin/GOLD/bin/gold.cgi |
| Phytozome | Genomic | 92 assembled and annotated plant species | https://phytozome.jgi.doe.gov/pz/portal.html |
| Plantgdb | Genomic, transcriptomic | 27 assembled and annotated plant species | http://www.plantgdb.org/ |
| Sol | Genomic | 11 Solanaceae species | https://solgenomics.net/ |
| Gramene | Genomic, genetic markers, QTLs | 53 plant species | http://www.gramene.org/ |
| MaizeGCB | Genomic, annotations, tool host | Zea mays | https://www.maizegdb.org/ |
| Tair | Genetic and molecular biology data | Arabidopsis thaliana | https://www.arabidopsis.org/ |
| CottonGEN | Genomic, Genetic and breeding resources | 49 Gossypium species | https://www.arabidopsis.org/ |
| PLEXdb | Gene expression | 14 plant species | http://www.plexdb.org/ |
| RicePro | Gene expression | Oryza sativa | http://ricexpro.dna.affrc.go.jp/ |
| CerealsDB | Genetic markers | Triticum aestivum | http://www.cerealsdb.uk.net/cerealgenomics/CerealsDB/indexNEW.php |
| PeanutBase | Genome, MAS, QTLs, Germplasm | Arachis hypogaea | https://peanutbase.org/ |
| SoyKb | Genetic markers, genomic resources | Glycine max | http://soykb.org/ |
| SoyBase | Genetic markers, QTLs, genomic resources | G. max | https://soybase.org/ |
| PGDBj | Genetic markers, QTLs, genomic resources | 80 plant species | http://pgdbj.jp/ |
| SNP-Seek | Genotype, Phenotype and Variety information | O. sativa | http://snp-seek.irri.org/ |
| GrainGenes | Genome, Genetic markers, QTLs, genomic resources | T. aestivum, Hordeum vulgare, Secale cereale, Avena sativa etc | https://wheat.pw.usda.gov/GG3/ |
| ASRP | small RNA | A. thaliana | http://asrp.danforthcenter.org/ |
| CSRDB | small RNA | Z. mays | http://sundarlab.ucdavis.edu/smrnas/ |
| BrassicaInfo | Genomic | 7 Brassica species | http://brassica.info/ |
| BRAD | Genomics, Genetic Markers and Maps | Brassica | http://brassicadb.org/brad/ |
| Ensembl Plants | Genomic | 45 plant species | http://plants.ensembl.org/index.html |
| Ipomoea Genome Hub | Genomic, EST | Ipomoea batatas | https://ipomoea-genome.org/ |
| PGSC | Genomic, annotation | S. tuberosum, S.chacoense | http://solanaceae.plantbiology.msu.edu/pgsc_download.shtml |
| GDR | Genomics, Genetics, breeding | Rosaceae | https://www.rosaceae.org/analysis/266 |
| HWG | Genomics, Transcriptomics, Genetic Markers | Forest trees and woody plants | https://www.hardwoodgenomics.org/ |