Table 3.
Computational tools in the RELIC suite.
| Tool Names | Availabilities | Highlights and comments |
|---|---|---|
| DNA2PRO | https://relic.bio.anl.gov/dna2pro.aspx | Mimotope sequence from DNA sequence |
| AAFREQ | https://relic.bio.anl.gov/aafreqs.aspx | Frequency of each residue at each position |
| POPDIV | https://relic.bio.anl.gov/popdiv.aspx | Population diversity of mimotopes |
| AADIV | https://relic.bio.anl.gov/aafreqs3.aspx | Amino acid frequency and diversity |
| INFO | https://relic.bio.anl.gov/info.aspx | Likelihood of random occurrence |
| DIVAA | https://relic.bio.anl.gov/divaa.aspx | Sequence diversities and relationships |
| MOTIF1 | https://relic.bio.anl.gov/motif1.aspx | Identifies continuous short motifs |
| MOTIF2 | https://relic.bio.anl.gov/motif2.aspx | Identifies discontinuous short motifs |
| CLOSEcon | https://relic.bio.anl.gov/closecon.aspx | Finds contact residues for a small ligand |
| HETEROalign | https://relic.bio.anl.gov/hetero.aspx | Aligns a mimotope to a PDB file |
| DistSim | https://relic.bio.anl.gov/DistSim.aspx | Computes distance and similarity |
| MATCH | https://relic.bio.anl.gov/match.aspx | Aligns mimotopes to template sequence |
| FASTAcon | https://relic.bio.anl.gov/fastaconsen.aspx | Finds short consensus sequences |
| FASTAskan | https://relic.bio.anl.gov/fastaskan.aspx | Possible templates for a set of mimotopes |