Table 3.
Genes and transcripts in CHESS (v2.1) that are also found in either RefSeq (rel 108) or GENCODE (v27) (columns 2 and 5) and that are unique to CHESS (columns 3 and 6)
| Gene biotype | Genes | Transcripts | ||||
|---|---|---|---|---|---|---|
| Shared by RefSeq or GENCODE | Novel in CHESS | Novel + FANTOM | Shared by RefSeq or GENCODE | Novel in CHESS | Novel + FANTOM | |
| Protein coding | 20,128 | 224 | 26 | 169,959 | 96,372 | 23,102 |
| LncRNA | 16,216 | 2671 | 1407 | 34,222 | 15,670 | 5840 |
| Antisense | 598 | 1546 | 494 | 637 | 2051 | 606 |
| MiscRNA | 1227 | 1 | 1 | 2284 | 2063 | 476 |
The columns labeled “Novel + FANTOM” show the subset of CHESS genes and transcripts that are not found in RefSeq or GENCODE but that are present in the FANTOM gene catalog