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. 2018 Nov 26;19:202. doi: 10.1186/s13059-018-1578-y

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 7 — Assessment of precision and recall rates with different CNV frequencies and correlations between CNV state and batch effect. CODEX2 has nearly perfect performance compared to CODEX and XHMM. The latter two suffer from low recall and precision rates, especially for common CNV signals that are highly correlated with the batch effects