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. 2018 Nov 23;19:837. doi: 10.1186/s12864-018-5238-0

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© The Author(s). 2018

Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 5 — Translation efficiency (TE) of genes in E. limosum ATCC 8486. (a) A scatter plot of mRNA expression fold change (mRNA) and TE fold change under the heterotrophic condition and the autotrophic condition. (b) Annotation-term network of increased and decreased TE for “biological process”, “molecular function”, and “cellular component”. The node sizes represent associated gene percentages. The color indicates term enrichment significance. (c) A heatmap of RNA fold change (RNA FC), RPF fold change (RPF FC), and translation efficiency fold change (TE FC), from top to bottom. Full RPF and TE data can be found in Additional file 8: Table S8