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. 2018 Nov 26;14(11):e1006550. doi: 10.1371/journal.pcbi.1006550

Table 5. Anova on classification performance of realistically oriented density gradient growth layouts.

Factor Accuracy Youden index J
Sum Sq. d.f. Mean Sq. F Prob>F Sum Sq. d.f. Mean Sq. F Prob>F
species 2.00 1 2.00 1847.0 0 4.40 1 4.40 1283.7 0
origins 1.24 2 0.62 572.8 0 5.52 2 2.76 804.0 0
growth mode 0.28 2 0.14 128.7 0 8.03 2 4.02 1170.7 0
Error 1.94 1794 0.00 6.15 1794 0.00
Total 5.46 1799 24.11 1799

A three-way analysis of variance was performed for both classification accuracy (see Fig 8, Table 4) and Youden index J (see Fig 9, Table 4), testing for effects of the factors ‘species’, ‘number of origins’, and ‘growth mode’. Sum Sq., Sum of squares; d.f., degrees of freedom; Mean Sq., mean squares = Sum.Sq. / d.f.