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. Author manuscript; available in PMC: 2018 Nov 28.
Published in final edited form as: Crit Rev Biochem Mol Biol. 2018 Jul 4;53(4):382–402. doi: 10.1080/10409238.2018.1483889

Table 2.

Primer elongation on rNMP-containing templates and elongation of rNMP-containing primers by wild-type and mutant TLS DNA polymerases from B-, X- and Y-families.

Family Polymerase a Wild type polymerase Steric Gate mutant
bypass b elongation c elongation c
A pol θ (Hs) d (0) e
B pol ζ (Sc) f 80-95% (1 - 4)
X g pol β (Hs) h 12.5% (1) 90% (<8)
pol λ (Hs) i 70 - 300% (1)
pol μ (Hs) j <1% (0) 10 - 25% (1)
Y pol IV (Ec) k (0) (15)
DinB1 (Ms) l (3) (13)
DinB2 (Ms) m 80 - 100 % (12) (16) (9)
pol V (Ec) n (>100) (>1000)
Dbh (Sa) o (0) 90% (10)
Dpo4 (Ss) p (10) (20)
pol η (Hs) r 95% 100% (20)
pol ι (Hs) s 100% (8) 100% (15)
pol κ (Hs) t 90% 100% (3)
a

The species abbreviations are as follows: Ec, Escherichia coli; Ms, Mycobacterium smegmatis; Sc, Saccharomyces cerevisiae; Sa, Sulfolobus acidocaldarius; Ss, Sulfolobus solfataricus; Hs, Homo sapiens.

b

Relative efficiency of TLS past rNMP. Number of efficiently bypassed consecutive rNMPs in the DNA template is shown in the brackets.

c

Relative efficiency of ribonucleotide elongation using either primers with single terminal rNMP or whole RNA primers. Number of sequentially incorporated rNMPs using either primers with terminal rNMP or whole DNA primers is shown in the brackets.

d

The data are from (Hogg et al., 2012; Kent et al., 2016).

e

Data obtained on primed double stranded DNA using Mg2+ (Lazzaro et al., 2012). Efficient extension of single-stranded DNA by rNTP incorporation especially in the presence of Mn2+ is described in the 2.1.1 section.

f

Data obtained using 2-subunit polymerase.

g

The data for the X-family polymerases were obtained using single-nucleotide gapped DNA substrates except those from (Bergoglio et al., 2003).

i

The data are from (Ramadan et al., 2003).

j

Whole RNA template was tested (Nick McElhinny and Ramsden, 2003).

k

The data are from (Jarosz et al., 2006).

n

The data are from (Vaisman et al., 2012a).

p

The data are from (Kirouac et al., 2011).

r

The data are from (Sassa et al., 2016).

s

The data are from (Donigan et al., 2014).