Table 6. SKMEL-2 antigens.
| Gene name | Protein ID | Length | Antigenic peptide name | Antigenic peptide seq | Loc | LogFC | Methylation level promoter | Methylation level gene body |
|---|---|---|---|---|---|---|---|---|
| PLIN2 | XP_016869748.1 | 445 | T000366 | SVASTITGV | 129 | 5.632593 | 13.151 | 25.123 |
| BIRC3 | XP_016873132.1 | 604 | T000939 | RLQEERTCKV | 550 | 2.404825 | ||
| FMNL1 | XP_006722125.1 | 1164 | T000850 | RLPERMTTL | 799 | 2.028542 | 7.675 | 8.02 |
| GFI1 | XP_005270806.1 | 422 | T001014 | QPR(S)PGPDYSL[QPRSPGPDYSL] | 17 | 3.026243 | 11.808 | 11.394 |
| LCK | XP_011539755.1 | 516 | T000743 | DYLRSVLEDF | 495 | 7.499478 | ||
| OCA2 | XP_011519942.1 | 852 | T000618 | IMLCLIAAV | 427 | -2.63585 | 2.826 | 13.916 |
| PTHLH | XP_011519076.1 | 177 | T000876 | FLHHLIAEI | 59 | 1.809974 | 7.344 | 1.106 |
| ABCC3 | XP_005257820.1 | 1463 | T000825 | LYAWEOSFL | 439 | 4.109376 | 0.99 | 5.013 |
| IGF2BP1 | XP_005257012.2 | 565 | T000906 | KTVNELQNL | 496 | 2.309944 | 27.031 | 3.641 |
| SYNPO | XP_005268427.1 | 903 | T000979 | RPSRS(S)PGL[RPSRSSPGL] | 615 | 1.504201 | ||
| RAB38 | XP_016872944.1 | 177 | T000663 | VLHWDPETV | 50 | -1.22612 | 0.428 | 0.892 |
| ARHGAP30 | XP_005245127.1 | 1044 | T001046 | RPAK(S)MDSL[RPAKSMDSL] | 323 | 1.867114 | ||
| MAGEA2B | XP_016884895.1 | 314 | T000162 | TTINYTLWR | 73 | 8.94263 | ||
| CCDC88B | XP_006718582.1 | 1560 | T001017 | SPEKAGRR(S)SL[SPEKAGRRSSL] | 588 | 2.423258 | ||
| XAGE1B | XP_016885238.1 | 146 | T000840 | CATWKVICKSCISQTPG | 98 | 1.782175 | ||
| MAGEA9B | XP_005278249.1 | 315 | T000196 | VALELVHFLL | 112 | 3.747172 |
Note: values passing transcriptome and methylome thresholds.