Table 2.
Top 20 highest significance SNPs reported to be associated with growth rate at 10°C in ashr analysis.
| SNP | lfsr | Location | Location | Annotation | NCBI Conserved domain search |
|---|---|---|---|---|---|
| unitig_630:6733 | 0.00 | intergenic | CRV2G00019736(dist = 3623) | Protein of unknown function | No conserved domains identified |
| unitig_878:353 | 0.00 | intergenic | NONE | . | . |
| unitig_760:385 | 0.00 | intergenic | CRV2G00020684(dist = 6578) | Similar to FRQ Frequency clock protein | FRQ domain |
| unitig_47:563 | 0.00 | intergenic | NONE | . | . |
| unitig_47:602 | 0.00 | intergenic | NONE | . | . |
| unitig_793:2158 | 0.00 | intergenic | CRV2G00016485(dist = 1475) | Protein of unknown function | No conserved domains identified |
| unitig_793:2167 | 0.00 | intergenic | CRV2G00016485(dist = 1484) | Protein of unknown function | No conserved domains identified |
| unitig_298:2434 | 0.00 | intergenic | NONE | . | . |
| unitig_298:2460 | 0.00 | intergenic | NONE | . | . |
| unitig_280:2479 | 0.00 | intergenic | NONE | . | . |
| unitig_345:10970 | 0.00 | intergenic | CRV2G00021787(dist = 1241) | Protein of unknown function | FN3-like domain |
| unitig_246:11272 | 0.00 | exonic | CRV2G00021642 | Similar to fmpE Nonribosomal peptide synthetase | AFD class I superfamily, alpha am amid superfamily |
| unitig_640:12334 | 0.00 | exonic | CRV2G00022020 | Protein of unknown function | Fungal_TF_MHR, GAL4, DNA pol3 gamma3 superfamily |
| unitig_640:12340 | 0.00 | exonic | CRV2G00022020 | Protein of unknown function | Fungal_TF_MHR, GAL4, DNA pol3 gamma3 superfamily |
| unitig_818:85374 | 0.00 | intergenic | CRV2G00017605(dist = 1606) | Mitochondrial chaperone BCS1-B | UhpC superfamily |
| unitig_601:93320 | 0.00 | intergenic | CRV2G00019351(dist = 7767) | Protein of unknown function | Fasciclin domain |
| unitig_643:109199 | 0.00 | intergenic | CRV2G00019327(dist = 50251) | Similar to betA Oxygen-dependent choline dehydrogenase | Choline dehydrogenase |
| unitig_697:153157 | 0.00 | upstream | CRV2G00018410(dist = 872) | Protein of unknown function | No conserved domains identified |
| unitig_823:628705 | 0.00 | intergenic | CRV2G00015724(dist = 3408) | Similar to FUS6 Efflux pump FUS6 | TRI12 Superfamily |
| scf_014:970797 | 0.00 | intergenic | CRV2G00012293(dist = 2794) | Protein of unknown function | GH18 chitinase-like superfamily |