Table 4.
Heterozygosity and homozygosity within the CL-SL and VL-SL genomes
| Isolate | Ho | He | Total SNPs | F (inbreeding coefficient) |
|---|---|---|---|---|
| VL38 | 26,663 | 57,592 | 84,255 | −1.28637 |
| L2331 | 38,248 | 58,153 | 96,401 | −1.21113 |
| VL28 | 13,098 | 24,524 | 47,622 | −1.10192 |
| R7 | 39,283 | 41,672 | 80,955 | −0.77418 |
| R5 | 44,411 | 40,095 | 84,506 | −0.65821 |
| L2343 | 56,029 | 6051 | 62,080 | 0.74412 |
| L2339 | 57,733 | 4071 | 61,804 | 0.83690 |
| L2372 | 52,717 | 2273 | 54,990 | 0.90426 |
Heterozygosity and homozygosity identified within the 8 isolate genomes, among a total of 100,318 SNPs. Number of heterozygous SNPs (He), homozygous SNPs (Ho) and inbreeding coefficient (F) were calculated using VCFtools