Table 1. Model biochemical reactants including their corresponding abbreviations (Fig 1), allocated compartment and initial concentration.
Variable | Abbreviation | Compartment | Initial Concentration (mM) |
---|---|---|---|
Glucose | GLC | Cytoplasm | 5.000 |
ATP | ATP | Cytoplasm | 2.800 |
ADP | ADP | Cytoplasm | 0.800 |
Glucose-6-phosphate | G6P | Cytoplasm | 0.120 |
Fructose-6-phosphate | F6P | Cytoplasm | 0.005 |
Inorganic phosphate | Pi | Cytoplasm | 5.000 |
Fructose-1,6-phosphate | F16P | Cytoplasm | 0.020 |
1,3-bisphospho-glycerate | BPG | Cytoplasm | 0.300 |
Fructose-2,6-phosphate | F26P | Cytoplasm | 0.004 |
Dihydroxyacetone-phosphate | DHAP | Cytoplasm | 0.300 |
Glyceraldehyde-phosphate | GHAP | Cytoplasm | 0.100 |
NAD | NAD | Cytoplasm | 1.220 |
NADH | NADH | Cytoplasm | 0.00056 |
2-phospho-D-glycerate | PG2 | Cytoplasm | 0.030 |
3-phospho-D-glycerate | PG3 | Cytoplasm | 0.270 |
Phosphoenolpyruvate | PEP | Cytoplasm | 0.150 |
Pyruvate | PYR | Cytoplasm | 0.100 |
Lactate | LAC | Cytoplasm | 0.500 |
Protons | H | Cytoplasm | 6.8 (pH) |
Magnesium ions | Mg | Cytoplasm | 5.000 |
Potassium ions | K | Cytoplasm | 8.000 |
Glucose | GLCe | Extracellular | 5.000 |
Lactate | LACe | Extracellular | 0.000 |
Protons | He | Extracellular | 7.4 (pH) |
Magnesium ions | Mge | Extracellular | 0.000 |
Potassium ions | Ke | Extracellular | 0.000 |
Extracellular variables are distinguished from cytoplasm variables using subscript “e”.