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. Author manuscript; available in PMC: 2019 Aug 16.
Published in final edited form as: Mol Cell. 2018 Aug 2;71(4):487–497.e3. doi: 10.1016/j.molcel.2018.06.037
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit polyclonal Rad52 D. Bishop lab N/A
Rabbit polyclonal Rad53 Abeam ab104232
Rabbit polyclonal H2A phospho serl29 Abeam abl5083
Mouse monoclonal V5-tag Thermo fisher R960–25
HRP goat anti-mouse Biorad 1706516
HRP goat anti-rabbit Biorad 1706515
Mouse monoclonal S9.6 DNA/RNA hybrid S9.6 (ATCC HB-8730) N/A
Chemicals, Peptides, and Recombinant Proteins
Hydroxyurea Sigma H8627
Nocodazole Sigma Ml 404
Alpha-factor Sigma T6901
Auxin (3-Indoleacetic acid) Sigma 13750
SYBR Green DNA I Thermo fisher S7563
RNase-A Thermo fisher EN0531
Proteinase K Roche 03115828001
AccI NEB R0161S
EcoRV NEB R3195S
Ncol NEB R3193S
Haelll NEB R0108S
BsrGI NEB R0108S
Critical Commercial Assays
Accel-NGS IS Plus DNA Library Kit (ssDNA ChIP library) SWIFT Biosciences 10024
Deposited Data
Rad52-ChIPseq This paper GSE110575
Experimental Models: Organisms/Strains
Strains list This work See Table S1
Oligonucleotides
qPCR oligos This work See Table S2
Software and Algorithms
Bowtie2 http://bowtie-bio.sourceforge.net/bowtie2/index.shtml N/A
MACS http://liulab.dfci.harvard.edu/MACS/ N/A
SamTools http://samtools.sourceforge.net/ N/A
BedTools http://bedtools.readthedocs.io/en/latest/ N/A
FlowJo https://www.flowjo.com/ N/A