Antibodies |
Rabbit polyclonal Rad52 |
D. Bishop lab |
N/A |
Rabbit polyclonal Rad53 |
Abeam |
ab104232 |
Rabbit polyclonal H2A phospho serl29 |
Abeam |
abl5083 |
Mouse monoclonal V5-tag |
Thermo fisher |
R960–25 |
HRP goat anti-mouse |
Biorad |
1706516 |
HRP goat anti-rabbit |
Biorad |
1706515 |
Mouse monoclonal S9.6 DNA/RNA hybrid |
S9.6 (ATCC HB-8730) |
N/A |
Chemicals, Peptides, and Recombinant Proteins |
Hydroxyurea |
Sigma |
H8627 |
Nocodazole |
Sigma |
Ml 404 |
Alpha-factor |
Sigma |
T6901 |
Auxin (3-Indoleacetic acid) |
Sigma |
13750 |
SYBR Green DNA I |
Thermo fisher |
S7563 |
RNase-A |
Thermo fisher |
EN0531 |
Proteinase K |
Roche |
03115828001 |
AccI |
NEB |
R0161S |
EcoRV |
NEB |
R3195S |
Ncol |
NEB |
R3193S |
Haelll |
NEB |
R0108S |
BsrGI |
NEB |
R0108S |
Critical Commercial Assays |
Accel-NGS IS Plus DNA Library Kit (ssDNA ChIP library) |
SWIFT Biosciences |
10024 |
Deposited Data |
Rad52-ChIPseq |
This paper |
GSE110575 |
Experimental Models: Organisms/Strains |
Strains list |
This work |
See Table S1
|
Oligonucleotides |
qPCR oligos |
This work |
See Table S2
|
Software and Algorithms |
Bowtie2 |
http://bowtie-bio.sourceforge.net/bowtie2/index.shtml |
N/A |
MACS |
http://liulab.dfci.harvard.edu/MACS/ |
N/A |
SamTools |
http://samtools.sourceforge.net/ |
N/A |
BedTools |
http://bedtools.readthedocs.io/en/latest/ |
N/A |
FlowJo |
https://www.flowjo.com/ |
N/A |