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. 2018 Aug 10;46(21):e126. doi: 10.1093/nar/gky730

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© The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 1. — Characterization and correction of the LTR Assembly Index (LAI) using 20 high-quality plant genomes. (A) The raw LAI is linearly correlated with the mean LTR identity of the genome. The LAI adjusted based on the mean LTR identity is independent of (B) the mean LTR identity of the genome, (C) the mean age of intact LTR-RTs, (D) the percentage of solo LTR among all LTR sequences, (F) total LTR-RT content, (G) haploid genome size, (H) CEGMA gene set completeness, and (I) contig N50. (E) LAI is linearly correlated with intact LTR-RT content. Each blue dot represents one species. The coefficient of determination (r²) and F-test P value between x- and y-axis are indicated on each plot. Significant and non-significant linear regressions are indicated in red- and gray- dotted lines, respectively.