Table 2.
Desaturase | Gene | Lead SNP | Chr:Position (b37) | EAF | Effect Allele/ Other Allele |
Serum | Adipose Tissue | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
Direction | p | n | Direction | p | n | ||||||
D5D | FADS1 | rs174549 | 11:61571382 | 0.33 | A/G | − | 1.9 × 10−70 | 1448 | − | 1.1 × 10−27 | 766 |
D6D | FADS2 | rs138194593 | 11:61620703 | 0.63 | CTCTT/C | + | 3.0 × 10−67 | 1448 | − | 7.9 × 10−1 | 611 |
D6D | PDXDC1 | rs6498540 | 16:15130594 | 0.71 | A/G | + | 4.8 × 10−8 | 1448 | − | 2.9 × 10−1 | 611 |
D6D | near MC4R | rs9957425 | 18:57462103 | 0.61 | T/C | + | 3.7 × 10−8 | 1448 | − | 9.0 × 10−1 | 611 |
SCD | PKD2L1 | rs603424 | 10:102075479 | 0.14 | A/G | − | 1.6 × 10−4 | 1453 | − | 2.2 × 10−19 | 783 |
a A, adenine; C, cytosine; Chr, chromosome; b37, NCBI build 37; D5D, δ-5-desaturase; D6D, δ-6-desaturase; EAF, effect allele frequency; FADS1, fatty acid desaturase 1; FADS2, fatty acid desaturase 2; G, guanine; MC4R, melanocortin 4 receptor; PDXDC1, pyridoxal-dependent decarboxylase domain containing 1; PKD2L1, polycystic kidney disease 2-like 1; SCD, Stearoyl-CoA desaturase; T, thymine.