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. 2018 Nov 13;10(11):628. doi: 10.3390/v10110628

Table 3.

Population genetic parameters for the partial RdRP gene sequences (495 bp) of HfMV1 recovered from Hymenoscyphus albidus and H. fraxineus.

Population N Sequence Length Net Sites S η h Hd π K
H. fraxineus all 221 495 348 49 57 48 0.79 0.007 2.35
H. fraxineus CH 214 495 349 50 58 49 0.80 0.007 2.41
H. fraxineus S-CH * 90 495 359 33 37 28 0.80 0.008 2.98
H. fraxineus SW-CH 41 495 485 89 102 27 0.96 0.039 19.21
H. fraxineus N-CH 85 495 458 73 81 53 0.96 0.019 8.72
H. fraxineus NW-F 5 495 488 16 16 3 0.70 0.014 6.60
H. albidus all 34 495 426 99 129 28 0.99 0.080 34.02
H. albidus CH 29 495 427 94 122 24 0.99 0.078 33.39
H. albidus S-CH 12 495 443 79 94 12 1.00 0.067 29.74
H. albidus SW-CH 13 495 467 76 88 10 0.96 0.052 24.03
H. albidus NW-F 5 495 494 34 34 4 0.90 0.026 14.40
H. fraxineus & H. albidus total 255 495 348 71 89 73 0.84 0.015 5.33

Only populations ≥5 samples were considered. Abbreviations: N, number of isolates; Sequence length, entire sequence length in bp; Net sites, sequence length in analysis; S, number of segregating sites; η, total number of mutations occurred in that population; h, number of haplotypes; Hd, haplotype diversity; π, nucleotide diversity estimated by the average number of differences per site between two sequences; K, average number of nucleotide differences; CH: Switzerland, S-CH: Southern Switzerland, SW-CH: South-Western Switzerland, N-CH: Northern Switzerland, NW-F: North-Western France, * including 2 isolates from Northern Italy.