Table 2.
Overexpression of the RNAi machinery components in CEVd infected tomato plants.
| Tomato Gene ID | RNAi Machinery Components | PARE | Small RNA | Number of phasiRNA Detected | ||
|---|---|---|---|---|---|---|
| Log FC | FDR | Log FC | FDR | |||
| Solyc06g048960.3.1 a | Dicer-like 2a | - | - | 2.2 | 0.002 | 44 |
| Solyc11g008540.2.1 a | Dicer-like 2b | 3.0 | 4.80e−5 | 4.2 | 5.27e−11 | 53 |
| Solyc11g008530.2.1 b | Dicer-like 2d | 6.2 | 8.92e−6 | 5.2 | 3.09e−12 | - |
| Solyc07g005030.3.1 a | Dicer-like 4 | 1.6 | 0.0008 | - | - | - |
| Solyc02g069260.3.1 a | Argonaute 2a | 2.7 | 0.0002 | 11.1 | 3.50e−24 | 102 |
| Solyc01g008960.3.1 a | Argonaute 4a | 1.3 | 0.0003 | - | - | - |
| Solyc03g114140.3.1 a | RNA-dependent RNA polymerase2 | 1.18 | 0.0007 | - | - | - |
| NR_108010 | MIR4376 | - | - | 3.2 | 1.86e−8 | |
| NR_108011 | MIR6022 | 1.3 | 0.04 | 1.80 | 0.006 | |
| NR_130104 | MIR171e | - | - | 2.50 | 0.018 | |
| LM611859 | MIR403 | - | - | 2.3 | 0.04 | |
| NR_130094 | MIR9474 | 1.5 | 0.002 | - | - | |
| NR_108004 | MIR5300 | 5.7 | 0.009 | - | - | |
| LM611867 | MIR9472 | 5.5 | 0.012 | - | - | |
a PARE reads present in both infected and mock plants; b PARE reads only present in infected plants.