Table 2.
Insertions (INs) and deletions (DELs) present in the genome of C. metallidurans MSR33.
| Type | Replicon (#) | Start | End | Size (bp) | Description | Targeted Gene(s) | Function (MaGe Annotation) (*) |
|---|---|---|---|---|---|---|---|
| IN | CHR1 | 328395 | 328395 | 1102 | IS1088 | Rmet_0312 | putative transporter |
| IN | CHR1 | 3106728 | 3106728 | 1102 | IS1088 | Rmet_2857 (tauB) | taurine ABC transporter ATP-binding protein |
| DEL | CHR2 | 602035 | 602490 | 455 | Rmet_4033 | LysR family transcriptional regulator | |
| IN | CHR2 | 741818 | 741818 | 1102 | IS1088 | Rmet_4160 (pelF) | EPS biosynthesis, biofilm formation |
| IN | CHR2 | 1529231 | 1529231 | 1102 | IS1088 | Rmet_4867 (acrA) | membrane fusion protein, multidrug efflux |
| IN | CHR2 | 2113815 | 2113815 | 256 | tniA/Tn3 | Rmet_5388 (apbE) | ApbE-like lipoprotein |
| IN | CHR2 | 2253560 | 2253560 | 3 | +CTT | Rmet_5508 | long-chain-fatty-acid-CoA ligase |
| DEL | CHR2 | 2253566 | 2253568 | 3 | −CGG | Rmet_5508 | long-chain-fatty-acid-CoA ligase |
| IN | CHR2 | 2440975 | 2440975 | 1104 | IS1088 | Rmet_5682 (nimB) | membrane fusion protein, heavy metal transport |
| IN | pMOL28 | 53484 | 53484 | 1104 | IS1088 | Rmet_6205 (cnrY) | antisigma factor |
| DEL | pTP6 | 26155 | 27385 | 1230 | upf30.5, upf31.0, parA | respectively an outer membrane protein, a DNA methylase, and a plasmid partition protein |
# Chromosome: CHR1; chromid: CHR2. * Genomic and Metabolics analysis software (www.genoscope.cns.fr).