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. 2018 Nov 29;19:460. doi: 10.1186/s12859-018-2485-7

Table 2.

Whole genome alignments of the A. thaliana draft and processed assemblies to the homozygous parent genomes

Col-0 alignments Cvi-0 alignments
Coverage
(% Col-0 length)
Identity
(%)
Coverage
(% Cvi-0 length)
Identity
(%)
FALCON Unzip
 - Primary contigs 97.9 98.7 97.9 98.6
 - Haplotigs 87.5 98.5 87.7 98.6
Purge Haplotigs
 - Primary contigs 96.9 98.8 96.6 98.6
 - Haplotigs 94.2 98.5 94.9 98.6
Redundans
 - Reduced contigs 95.5 98.8 94.6 98.5