Fig. 5.

Terminal regions of IS630-type transposons in P. luminescens TT01 and DJC. The terminal 30 bp from IS630-type (left 5′ end, right 3′ end) including the targeting site (ta dinucleotide) and target site duplication (also ta, both in lowercase red) are shown. The MITEPlu5 sequence was read from the WebLogo (Fig. 4a). MITEPlu5 shares similarity to the CCC subtype of IS630-type transposons. Ident: bases that are identical for the transposons of the corresponding subtype are shown. Dots: differing bases. Hyphens: the targeting site and target site duplication are not part of the element. Match: bases that match between MITEPlu5 and the transposons. In the match line, uppercase: full match, lowercase: match to one of the transposons. Conservation of targeting site/target site duplication is indicated by lowercase red letters