Skip to main content
. 2014 Nov 19;19(11):19050–19065. doi: 10.3390/molecules191119050

Table 3.

Binding free energy, number of noncovalent molecular interactions and RMSD.

Compound ΔGb (kcal/mol) Noncovalent Molecular Interaction RMSD(Å)
Hydro I Interaction Atom of Compound Residue Distance (Å)
5a −10.42 H-bonding OH (8-membered ring) G-2484 2.0 1.21
H-bonding N (thiadiazole) G-2044 2.4
H-bonding N (thiadiazole) G-2044 2.7
5b −10.56 H-bonding OH (8-membered ring) G-2484 2.0 1.23
H-bonding N (thiadiazole) C-2044 2.1
H-bonding N (thiadiazole) G-2044 2.2
5c −11.50 H-bonding OH (8-membered ring) G-2484 2.1 1.08
H-bonding C=O (ester) G-2044 2.7
H-bonding C=O (ester) G-2044 2.8
6a −12.21 H-bonding OH (8-membered ring) G-2484 1.9 1.00
H-bonding C=O (ester) G-2044 2.5
H-bonding C=O (ester) G-2044 2.5
H-bonding NH2 (terminal) C-2565 2.1
H-bonding NH2 (terminal) C-2565 2.7
6b −11.69 H-bonding OH (8-membered ring) G-2484 1.9 1.00
H-bonding C=O (ester) G-2044 2.5
H-bonding C=O (ester) G-2044 2.5
H-bonding N (thiadiazole) G-2044 2.1
H-bonding N (thiadiazole) G-2044 2.3
H-bonding NH2 (terminal) C-2565 2.6
6c −14.14 H-bonding OH (8-membered ring) G-2484 2.1 1.02
H-bonding C=O (ester) G-2044 2.3
H-bonding C=O (ester) G-2044 2.3
H-bonding N (thiadiazole) G-2044 2.3
H-bonding NH2 (phenylglycinamide) C-2565 1.6
6d −15.09 H-bonding OH (8-membered ring) G-2484 2.1 1.02
H-bonding C=O (ester) G-2044 2.3
H-bonding C=O (ester) G-2044 2.3
H-bonding N (thiadiazole) G-2044 2.2
H-bonding NH2 (phenylglycinamide) C-2565 2.3
Cation–π interaction N (pyrrolidine) G-2045 3.7