Table 3.
Binding free energy, number of noncovalent molecular interactions and RMSD.
Compound | ΔGb (kcal/mol) | Noncovalent Molecular Interaction | RMSD(Å) | |||
---|---|---|---|---|---|---|
Hydro I Interaction | Atom of Compound | Residue | Distance (Å) | |||
5a | −10.42 | H-bonding | OH (8-membered ring) | G-2484 | 2.0 | 1.21 |
H-bonding | N (thiadiazole) | G-2044 | 2.4 | |||
H-bonding | N (thiadiazole) | G-2044 | 2.7 | |||
5b | −10.56 | H-bonding | OH (8-membered ring) | G-2484 | 2.0 | 1.23 |
H-bonding | N (thiadiazole) | C-2044 | 2.1 | |||
H-bonding | N (thiadiazole) | G-2044 | 2.2 | |||
5c | −11.50 | H-bonding | OH (8-membered ring) | G-2484 | 2.1 | 1.08 |
H-bonding | C=O (ester) | G-2044 | 2.7 | |||
H-bonding | C=O (ester) | G-2044 | 2.8 | |||
6a | −12.21 | H-bonding | OH (8-membered ring) | G-2484 | 1.9 | 1.00 |
H-bonding | C=O (ester) | G-2044 | 2.5 | |||
H-bonding | C=O (ester) | G-2044 | 2.5 | |||
H-bonding | NH2 (terminal) | C-2565 | 2.1 | |||
H-bonding | NH2 (terminal) | C-2565 | 2.7 | |||
6b | −11.69 | H-bonding | OH (8-membered ring) | G-2484 | 1.9 | 1.00 |
H-bonding | C=O (ester) | G-2044 | 2.5 | |||
H-bonding | C=O (ester) | G-2044 | 2.5 | |||
H-bonding | N (thiadiazole) | G-2044 | 2.1 | |||
H-bonding | N (thiadiazole) | G-2044 | 2.3 | |||
H-bonding | NH2 (terminal) | C-2565 | 2.6 | |||
6c | −14.14 | H-bonding | OH (8-membered ring) | G-2484 | 2.1 | 1.02 |
H-bonding | C=O (ester) | G-2044 | 2.3 | |||
H-bonding | C=O (ester) | G-2044 | 2.3 | |||
H-bonding | N (thiadiazole) | G-2044 | 2.3 | |||
H-bonding | NH2 (phenylglycinamide) | C-2565 | 1.6 | |||
6d | −15.09 | H-bonding | OH (8-membered ring) | G-2484 | 2.1 | 1.02 |
H-bonding | C=O (ester) | G-2044 | 2.3 | |||
H-bonding | C=O (ester) | G-2044 | 2.3 | |||
H-bonding | N (thiadiazole) | G-2044 | 2.2 | |||
H-bonding | NH2 (phenylglycinamide) | C-2565 | 2.3 | |||
Cation–π interaction | N (pyrrolidine) | G-2045 | 3.7 |