Skip to main content
. 2016 Nov 23;21(11):1604. doi: 10.3390/molecules21111604

Table 1.

Adjusted parameters for GIST-based desolvation function of AutoDock-GIST 1.

Parameter Set ρco ΔGco (kcal/mol/Water) ΔGaff (kcal/mol)
Affinity parameter set 4.8 1.0 −0.50
Pose parameter set 4.3 1.9 −0.25

1 ρco is a density cutoff parameter for unfavorable water molecules in active site; ΔGco is a free-energy cutoff parameter for active-site water; ΔGaff is a free-energy gain of unfavorable water molecule displaced by a ligand heavy atom. Parameter fitting methods are described in the Materials and Methods section.