Table 1.
Adjusted parameters for GIST-based desolvation function of AutoDock-GIST 1.
Parameter Set | (kcal/mol/Water) | (kcal/mol) | |
---|---|---|---|
Affinity parameter set | 4.8 | 1.0 | −0.50 |
Pose parameter set | 4.3 | 1.9 | −0.25 |
1 is a density cutoff parameter for unfavorable water molecules in active site; is a free-energy cutoff parameter for active-site water; is a free-energy gain of unfavorable water molecule displaced by a ligand heavy atom. Parameter fitting methods are described in the Materials and Methods section.