4Ei-1	eIF4E inhibitor 1
ADCY9	adenylyl cyclase 9
AGO2	argonaute 2
Akt (1, 2, 3)	oncogene Akt serine/threonine kinase 1, 2, 3 (alias: protein kinase B, PKB)
AP-1	activator protein 1
ASPP2	apoptosis-stimulating protein of p53-2
ANGPTL4	angiopoetin-like 4
BMP	bone morphogenetic protein
CAF	cancer-associated fibroblast
CD51	cell differentiation 51, alias: integrin αv
CD61	cell differentiation 61, alias: integrin β3
CD106	cell differentiation 106, alias: vascular cell adhesion molecule-1, VCAM-1
CdGAP	Cdc42 GTPase-activating protein
CDH1	E-cadherin
CDH2	N-cadherin
CDK2	cyclin-dependent kinase 2
ceRNA	competing endogenous RNA
CITED1	Cbp/p300-interacting transactivator 1
Cnt3	concentrating nucleoside transporter 3
CpG	cytosine-phosphate-guanine nukleotide
CRB3	Crumbs3
CRC	colorectal cancer
Cre	cyclization recombinase
CREB1	cAMP-responsive element binding protein 1
CRTC1	CREB regulated transcription coactivator 1
CSC	cancer stem cell
CtBP	c-terminal-binding protein
CTC	circulating tumor cell
CUBIC	clear, unobstructed brain/body imaging cocktails and computational analysis
CXCL	C-X-C motif chemokine ligand
Dab2	disabled-2
DUB	deubiquitinase
ECM	extracellular matrix
eEF1A1	eukaryotic elongation factor 1A1
EGF	epidermal growth factor
EMT	epithelial-mesenchymal transition
EMT-TFs	EMT transcription factors
EndMT	endothelial-mesenchymal transition
ENT1	equilibrative nucleoside transporter 1
EpCam	epithelial cell adhesion molecule
ERK2	extracellular signal regulated kinase 2
ESRP	epithelial splicing regulatory protein
ETS2	ETS proto-oncogene 2
Fbxo45	F-box homologue 45
FLT3	Fms-related tyrosine kinase 3
FN1	fibronectin 1
Fos	FBJ osteosarcoma oncogene
Fra-1	Fos-related antigen 1
Fsp1	fibroblast-specific protein 1
GEF-H1	guanine exchange factor H1
GFP	green fluorescent protein
GM-CSF	granulocyte-monocyte colony stimulating factor
GPNMB	glycoprotein nmb
GSK3β	glycogen synthase kinase 3β
H3K4	histone 3, lysine 4
H3K27me	histone 3, lysine 27, methylation
HAS2	hyaluronan synthase 2
HDAC1	histone deacetylase 1
Hic-5	hydrogen peroxide-inducible clone 5
HIF	hypoxia-inducible factor
HMGA2	high mobility group A2
HMLE	human mammary epithelial cells immortalized with the large T antigen
HNF4	hepatocyte nuclear factor 4
hnRNPE1	heterogeneous ribonucleoprotein E1
Id1/2	inhibitor of differentiation 1/2
IL-11	interleukin 11
ILEI	interleukin-like EMT-inducer
I-Smad	inhibitory Smad
ITGA1	integrin α1
JMJD3	Jumonji domain-containing protein 3
JNK	Jun N-terminal kinase
Jun	Jun proto-oncogene
Klf4	Krüppel-like factor 4
KPC	K-Ras and mutant p53 pancreatic carcinoma mouse model
LARG	leukemia-associated Rho guanine nucleotide exchange factor
Lgr4	leucine-rich repeat-containing G protein-coupled receptor 4
lncRNA	long non-coding RNA
lncRNA-ATB	lncRNA-induced by TGFβ
lncRNA-HIT	HOXa transcript induced by TGFβ
LOXL2	lysyl oxidase-like 2
LSD1	lysine-specific histone demethylase 1, alias: KDM1A
MAF	musculoaponeurotic fibrosarcoma
MAFK	MAF oncogene family protein K
Malat1	metastasis associated in lung adenocarcinoma transcript-1
MAP-kinase	mitogen-activated protein kinase
MAPK1	MAP-kinase 1
MDM2	mouse double minute 2 homolog
MEKK2	mitogen-activated protein kinase kinase kinase 2
MET	mesenchymal-epithelial transition
MIG6	mitogen-inducible gene 6
MiRNA	micro-RNA
MMP	matrix metalloprotease
MMTV-PyMT	mouse mammary tumor virus polyoma virus middle T antigen
MOF	males absent on the first (alias: KAT8, lysine acetyltransferase 8)
MT1-MMP	membrane type I-matrix metalloprotease
MYCBP	Myc binding protein
Net1	neuroepithelial cell transforming 1
NF-κB	nuclear factor-κB
Nkx2.8	Nk2 homeobox 2.8
PAI-1	plasminogen activator inhibitor 1
Par3/6	partitioning-defective 3/6
Pc2	polycomb protein 2
PDGF	platelet-derived growth factor
PIAS	protein inhibitor of activated Stat
PMEPAI	prostate transmembrane protein androgen induced-1
PRC1/2	polycomb-repressive complex 1 and 2
PTBP3	polypyrimidine tract binding protein 3
R-Smad	receptor-activated Smad
Rad17	radiation-induced 17 (alias: checkpoint clamp loader component)
RFP	red fluorescent protein
Rho	Ras homologue
RISC	RNA-induced silencing complex
RING	really interesting new gene
RNF8	RING finger 8
ROS	reactive oxygen species
RTK	receptor tyrosine kinase
SAE1/2	SUMO1 activating enzyme subunit 1
Shh	sonic hedegehog
Siah	seven in absentia homolog
SIK1	salt-inducible kinase 1
Smurf	Smad ubiquitylation regulatory factor
SND1	staphylococcal nuclease and tudor domain containing 1
SNAG	Snail1/Gfi-1
Sox5	SRY-related high-mobility-group box 5
SPRY	SP1a and the Ryanodine Receptor
Src	(Rous) sarcoma (virus oncogene)
STAT	signal transducer and activator of transcription
SUMO	small ubiquitin-related modifier
Suz12	suppressor of zeste 12
TAK1	TGFβ-activated kinase 1
TAZ	transcriptional coactivator with a PDZ-binding domain
TF	transcription factor
TGFβ	transforming growth factor β
TGIF	TGFβ-induced factor homeobox 1
TIC	tumor initiating cell
TNBC	triple-negative breast cancer
TNFα	tumor necrosis factor-α
TOP1	topoisomerase 1
TRAF	TNFα receptor-associated factor
β-TrCP	β-transducin repeats-containing protein
Trx	thioredoxin
TXNIP	thioredoxin-interacting protein
UBC9	ubiquitin-conjugating enzyme 9
USP	ubiquitin-specific protease
UTR	untranslated region
Wnt	wingless and integration site
YAP	Yes-associated protein
ZEB1/2	zinc finger E-box binding homeobox 1/2
ZO	zonula occludens