Ab	Antibody
ACR	American College of Rheumatology
aPL	Antiphospholipid
BBB	Blood–brain barrier
BCSFB	Blood–cerebrospinal-fluid barrier
BOLD	Blood oxygen level-dependent
CD	Cluster of differentiation
CMA	Chaperone-mediated autophagy
CNS	Central nervous system
CP	Choroid plexus
CSF	Cerebrospinal fluid
Cyt c	Cytochrome c
dsDNA	Double stranded DNA
DTI	Diffusion tensor imaging
DWI	Diffusion-weighted imaging
ECs	Endothelial cells
Fas/APO-1/CD95	Apoptosis stimulating fragment
HPA	Hypothalamic–pituitary–adrenal
HSCT	Hematopoietic stem cell transplantation
HSPA8	Heat shock 70-kD protein A8 isoform 1
Iba1	Ionized calcium binding adaptor molecule 1
ICAM-1	Intercellular adhesion molecule 1
IFN	Interferon
IFNAR	IFN-α/β receptor
Ig	Immunoglobulin
IL	Interleukin
iNOS	Inducible nitric oxide synthase
LAP	LC3-associated phagocytosis
LC3	Microtubule-associated protein light chain 3
lpr	Lymphoproliferation
M-CSF	Macrophage colony-stimulating factor
MIF	Macrophage migration inhibitory factor
MPTP	Mitochondrial permeability transition pore
MRA	Magnetic resonance angiography
MRI	Magnetic resonance imaging
MRL	Murphy Roths Large
MRS	Magnetic resonance spectroscopy
MS	Multiple sclerosis
MTI	Magnetic transfer imaging
mTOR	Mechanistic/mammalian target of rapamycin
MTR	Magnetic transfer ratio
NAA	N-acetyl aspartate
NMDAR	N-methyl-D-aspartate receptor
NPSLE	Neuropsychiatric systemic lupus erythematosus
NSAIDs	Non-steroid anti-inflammatory drugs
NZW	New Zealand White
NZB	New Zealand Black
PAF	Paraformaldehyde
RARE	Rapid acquisition with relaxation enhancement
ROS	Reactive oxygen species
SQSTM1/p62	Sequestosome-1/p62
T1	Longitudinal relaxation time
T2	Transverse relaxation time
TE	Echo time
Tfh	T follicular helper
TNF	Tumor necrosis factor
TR	Repetition time
TWEAK	TNF-like weak inducer of apoptosis
VCAM-1	Vascular cell adhesion protein 1
vs.	versus