Skip to main content
. 2018 Nov 2;19(11):3438. doi: 10.3390/ijms19113438

Figure 3.

Figure 3

Heat map diagrams of relative expression levels of candidate genes inoculation with Ensifer fredii HH103 and Ensifer fredii HH103ΩrhcN, 0.5, 3, 6, 12, and 24 h post inoculation. Heatmap was plotted using heatmap.2 function of the R/Bioconductor package gplots. Hierarchical clustering of the DEGs was done by complete method with Euclidean distance. The gene expression levels were transformed by log2 (FPKM + 1) and the values were centered and scaled in row direction. X-axis, differentially expressed gene names; Y-axis, samples. Purple and blue colors indicate a relative increase or decrease in expression inoculation with Ensifer fredii HH103 and Ensifer fredii HH103ΩrhcN. Seven genes (Glyma.12g028300, Glyma.12g030000, Glyma.12g036900, Glyma.12g052400, Glyma.12g055500, Glyma.12g031200 and Glyma.12g073000) had different expression patterns inoculation with Ensifer fredii HH103 comparison with Ensifer fredii HH103ΩrhcN mutant.