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. Author manuscript; available in PMC: 2018 Dec 2.
Published in final edited form as: J Comput Graph Stat. 2017 Oct 9;26(4):918–929. doi: 10.1080/10618600.2017.1328365

Figure 5 & Table 1:

Figure 5 & Table 1:

Simulated outbreak with SEIR dynamics that varied over four epochs (shaded regions). Weekly prevalence counts (points) were binomially sampled with sampling probability ρ “ 0.95 from the true unobserved prevalence (solid line). The table presents the effective reproductive number computed based on the number of susceptibles at the beginning of each epoch, R0Eff=β(τ)S(τ)/μ(τ), the mean latent period, 1/γ, and the mean infectious period, 1/μ.