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. 2018 Nov 10;7(12):giy132. doi: 10.1093/gigascience/giy132

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© The Author(s) 2018. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 6: — Read mapping to V. corymbosum reference genome. (A, left panels) Proportion of total reads mapping to reference (gray boxes or higher values) converted to counts (white boxes or lower values) and (A, right panels) percentage of the difference.(B) Mismatch rate depicted by each software option. Five mapping software programs were compared at default and modified settings to increase mismatch tolerance. Reads used (cor) or not (Uc) error correction and Trimmomatic (trimm) or Skewer trimming software. Results are distribution of eight samples.