Table 1. Targets included in the conformational and sequence recovery benchmark.
For each of the benchmark targets is indicated the CATH superfamily and representatives used in the simulations. (#) indicates the number of segments in the target protein that are considered motif. Motif range indicates the residues considered motif according to the PDB numbering.
| ID | CATH | # | reference | target | motif range |
|---|---|---|---|---|---|
| T01 | CATH.3.40.140.10 | 1 | 1pgxA | 2pw9C | 69–73 |
| T02 | CATH.3.30.310.50 | 1 | 3i3wA | 4bjuA | 464–486 |
| T03 | CATH.3.30.70.980 | 1 | 1lfpA | 1mw7A | 140–150 |
| T04 | CATH.3.30.70.100 | 1 | 1rjjA | 1lq9A | 19–45 |
| T05 | CATH.3.10.20.30 | 1 | 2q5wD | 2pkoA | 49–64 |
| T06 | CATH.2.30.29.30 | 1 | 1c1yB | 1h4rA | 39–59 |
| T07 | CATH.3.10.20.90 | 1 | 2bkfA | 2al6B | 115–119 |
| T08 | CATH.3.10.20.90 | 1 | 1wj4a | 1wiaA | 181–200 |
| T09 | CATH.3.10.20.90 | 1 | 3ny5B | 3phxB | 100–121 |
| T10 | CATH.3.10.20.310 | 1 | 2x8xX | 2qdfA | 103–121 |
| T11 | CATH.3.10.320.10 | 1 | 4p5mA | 2bc4C | 56–66 |
| T12 | CATH.2.40.40.20 | 1 | 1cr5B | 2pjhB | 119–142 |
| T13 | CATH.2.40.40.20 | 2 | 1cr5B | 2pjhB | 119–142, 168–173 |
| T14 | CATH.3.30.110.40 | 1 | 1jdqA | 3lvjC | 14–37 |