TABLE 1.
Relative protein abundance (in alphabetical order) in the C57BL/6J retina as assessed by label free quantifications
| Protein | Number of Peptides | Peptide Intensity (a.u.) × 106 |
| Cholesterol-related proteins | ||
| APOA1 | 5 | 9.4 ± 8.1 |
| APOA4 | 3 | 1.4 ± 1.2 |
| APOE | 6 | 4.2 ± 1.2 |
| APOJ | 8 | 6.6 ± 3.4 |
| CYP27A1 | 1 | 2.3 ± 1.8 |
| DHCR7 | 2 | 2.4 ± 1.1 |
| LRP1 | 4 | 3.3 ± 0.9 |
| LRPAP1 | 5 | 5.7 ± 4.0 |
| MESDC2 | 5 | 3.2 ± 1.8 |
| OSBP1 | 1 | 2.9 ± 1.4 |
| OSBP2 | 1 | 3.7 ± 1.8 |
| OSBPL1A | 3 | 4.7 ± 4.5 |
| OSBPL2 | 1 | 3.8 ± 2.3 |
| OSBPL8 | 1 | 2.5 ± 1.8 |
| PON1 | 5 | 8.5 ± 2.3 |
| PON2 | 2 | 6.3 ± 3.3 |
| SCARB2 | 2 | 5.2 ± 2.0 |
| SORT1 | 1 | 4.5 ± 2.5 |
| Housekeeping Proteins | ||
| ACTB | 31 | 578.1 ± 773.1 |
| GAPDH | 35 | 1,445.4 ± 760.4 |
| TUBA1A | 47 | 500.5 ± 766.8 |
| Most Abundant Retinal Proteins | ||
| HIST1H1C | 3 | 4,832.0 ± 6,081.8 |
| HIST1H1E | 3 | 5,149 ± 4,426.7 |
| HIST1H2AF | 5 | 5,881.7 ± 8,425.4 |
| HIST1H2BB | 10 | 3,743.2 ± 4,806.4 |
| HIST1H3A | 8 | 2,463,4 ± 3,603.4 |
| HIST1H4K | 15 | 2,509.5 ± 3,787.6 |
| CRYAA2 | 5 | 733.6 ± 707.7 |
| CRYBB2 | 16 | 1,486.7 ± 1626.5 |
| ALDOA | 29 | 482.4 ± 490.3 |
| ATP5B | 49 | 309.4 ± 331.0 |
| CKB | 30 | 615.2 ± 599.2 |
| ENO1 | 43 | 1,014 ± 1,353.5 |
| LDHA | 21 | 599,8 ± 532,8 |
| PGAM1 | 16 | 537.5 ± 588.6 |
| PGK1 | 31 | 476.2 ± 480.7 |
| PKM | 45 | 730.4 ± 1,062,5 |
| Vision-related proteins | ||
| GNB1 | 16 | 1,093.4 ± 841.1 |
| GNGT1 | 6 | 814,4 ± 1,195.8 |
| RHO | 8 | 959.9 ± 1,139.2 |
| SAG | 27 | 788.5 ± 1,037.8 |
a.u., arbitrary units.