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. 2018 Oct 17;59(12):2368–2382. doi: 10.1194/jlr.M090043

TABLE 1.

Relative protein abundance (in alphabetical order) in the C57BL/6J retina as assessed by label free quantifications

Protein Number of Peptides Peptide Intensity (a.u.) × 106
Cholesterol-related proteins
 APOA1 5 9.4 ± 8.1
 APOA4 3 1.4 ± 1.2
 APOE 6 4.2 ± 1.2
 APOJ 8 6.6 ± 3.4
 CYP27A1 1 2.3 ± 1.8
 DHCR7 2 2.4 ± 1.1
 LRP1 4 3.3 ± 0.9
 LRPAP1 5 5.7 ± 4.0
 MESDC2 5 3.2 ± 1.8
 OSBP1 1 2.9 ± 1.4
 OSBP2 1 3.7 ± 1.8
 OSBPL1A 3 4.7 ± 4.5
 OSBPL2 1 3.8 ± 2.3
 OSBPL8 1 2.5 ± 1.8
 PON1 5 8.5 ± 2.3
 PON2 2 6.3 ± 3.3
 SCARB2 2 5.2 ± 2.0
 SORT1 1 4.5 ± 2.5
Housekeeping Proteins
 ACTB 31 578.1 ± 773.1
 GAPDH 35 1,445.4 ± 760.4
 TUBA1A 47 500.5 ± 766.8
Most Abundant Retinal Proteins
 HIST1H1C 3 4,832.0 ± 6,081.8
 HIST1H1E 3 5,149 ± 4,426.7
 HIST1H2AF 5 5,881.7 ± 8,425.4
 HIST1H2BB 10 3,743.2 ± 4,806.4
 HIST1H3A 8 2,463,4 ± 3,603.4
 HIST1H4K 15 2,509.5 ± 3,787.6
 CRYAA2 5 733.6 ± 707.7
 CRYBB2 16 1,486.7 ± 1626.5
 ALDOA 29 482.4 ± 490.3
 ATP5B 49 309.4 ± 331.0
 CKB 30 615.2 ± 599.2
 ENO1 43 1,014 ± 1,353.5
 LDHA 21 599,8 ± 532,8
 PGAM1 16 537.5 ± 588.6
 PGK1 31 476.2 ± 480.7
 PKM 45 730.4 ± 1,062,5
Vision-related proteins
 GNB1 16 1,093.4 ± 841.1
 GNGT1 6 814,4 ± 1,195.8
 RHO 8 959.9 ± 1,139.2
 SAG 27 788.5 ± 1,037.8

a.u., arbitrary units.