Supplementary Table 2.

Comparison of DCLs between different comparisons

Items (Comparison A vs. Comparison B)	Number of DCLs	Number of DCLs common to the double comparison (%)		Number of DCLs specifically found in Comparison A	Number of DCLs specifically found in Comparison B
		Consistently related	Inconsistently related
(Early vs. Ctrl) versus (Late vs. Ctrl)	443,820	18,713 (4.22)	1983 (0.45)	281,003	142,121
(Early vs. Ctrl) versus (Late vs. Early)	402,133	5114 (1.27)	2073 (0.52)	294,512	100,434
(Late vs. Ctrl) versus (Late vs. Early)	266,605	2464 (0.92)	1369 (0.51)	158,984	103,788

DCLs: Differentially coexpressed links.